7CZP
S protein of SARS-CoV-2 in complex bound with P2B-1A1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C (A, B, C) | Spike glycoprotein | polymer | 1283 | 142502.6 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 2 | D, F (H, J) | Immunoglobulin heavy variable 4-59,Chain H of P2B-1A1,Anti-RhD monoclonal T125 gamma1 heavy chain | polymer | 450 | 49386.6 | 2 | UniProt (P01825) UniProt (Q5EFE5) Pfam (PF07686) Pfam (PF07654) | Homo sapiens (Human) | Ig heavy chain V-II region NEWM |
| 3 | E, G (L, N) | IG c181_light_IGLV2-14_IGLJ3,IGL@ protein | polymer | 216 | 22806.0 | 2 | UniProt (A0A5C2GM57) UniProt (Q8N5F4) Pfam (PF07654) Pfam (PF07686) | Homo sapiens (Human) | |
| 4 | AA, BA, CA, DA, H... (a, b, c, d, D...) | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 23 | In PDB GlyTouCan (G42666HT) | |||
| 5 | AB, BB, CB, DB, EA... (C, A, B) | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 28 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
H, J: 1 - 97 (UniProt: P01825)
H, J: 98 - 106 (PDB: 7CZP)
H, J: 107 - 450 (UniProt: Q5EFE5)
L, N: 1 - 100 (UniProt: A0A5C2GM57)
L, N: 101 - 216 (UniProt: Q8N5F4)
| PDB | External Database | Details |
|---|---|---|
| Pro 986 | Lys 986 | conflict |
| Pro 987 | Val 987 | conflict |
| Leu 1274 | - | expression tag |
| Glu 1275 | - | expression tag |
| Asp 1276 | - | expression tag |
| Tyr 1277 | - | expression tag |
| Lys 1278 | - | expression tag |
| Asp 1279 | - | expression tag |
| Asp 1280 | - | expression tag |
| Asp 1281 | - | expression tag |
| Asp 1282 | - | expression tag |
| Lys 1283 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Lys 76 | Asn 95 | conflict |
H, J: 107 - 450 (UniProt: Q5EFE5)
| PDB | External Database | Details |
|---|---|---|
| Asp 108 | His 133 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Phe 48 | Leu 48 | conflict |
| Asn 96 | Ser 96 | conflict |
| Phe 99 | Trp 99 | conflict |
| Ala 100 | Val 100 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 7 |
| Total formula weight | 571893.0 | |
| Branched | Number of molecules | 23 |
| Total formula weight | 9761.2 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 6193.8 | |
| All* | Total formula weight | 587848.1 |
