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7CYD

Cryo-EM structures of Alphacoronavirus spike glycoprotein

Replaces:  6IXB
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B, CSpike glycoproteinpolymer1116122402.03UniProt (P15423)
Pfam (PF01600)
Pfam (PF19209)
Pfam (PF01601)
In PDB
Human coronavirus 229E (HCoV-229E)S glycoprotein,E2,Peplomer protein
2D, F, Halpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched1235.13In PDB
GlyTouCan (G07617FP)
3E, G, Ibeta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched586.53In PDB
GlyTouCan (G15407YE)
4B, A, C2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.242Chemie (NAG)
Sequence modifications
A, B, C: 1 - 1116 (UniProt: P15423)
PDBExternal DatabaseDetails
Met 642Arg 642variant
Arg 681Thr 681variant
Ala 765Val 765variant
Ser 775Ala 775variant
Ile 871Thr 871variant
Leu 937Ile 937variant
Arg 971Thr 971variant
Ile 1005Met 1005variant
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight367206.0
BranchedNumber of molecules6
Total formula weight5464.9
Non-Polymers*Number of molecules42
Total formula weight9290.7
All*Total formula weight381961.7
*Water molecules are not included.

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PDB entries from 2024-07-24

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