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7CRQ

NSD3 bearing E1181K/T1232A dual mutation in complex with 187-bp NCP (2:1 binding mode)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E
(M, E)
Histone H3polymer13515223.82UniProt (Q92133)
Pfam (PF00125)
Xenopus laevis (African clawed frog)
2B, F
(B, F)
Histone H4polymer10211263.22UniProt (P62799)
Pfam (PF15511)
Xenopus laevis (African clawed frog)
3C, G
(C, G)
Histone H2Apolymer12913978.22UniProt (Q6AZJ8)
Pfam (PF00125)
Pfam (PF16211)
UniProt (by SIFTS) (P06897)
Xenopus laevis (African clawed frog)
4D, H
(D, H)
Histone H2Bpolymer12213524.82UniProt (Q6AZK7)
Pfam (PF00125)
UniProt (by SIFTS) (P02281)
Xenopus tropicalis (Western clawed frog)
5I
(A)
DNA (168-MER)polymer18757488.61Xenopus laevis
6J
(K)
DNA (168-MER)polymer18757982.91Xenopus laevis
7K, L
(I, L)
Histone-lysine N-methyltransferase NSD3polymer75885454.42UniProt (Q9BZ95)
Pfam (PF17907)
Pfam (PF00856)
Pfam (PF17982)
Pfam (PF23011)
Pfam (PF22908)
Pfam (PF23004)
Pfam (PF00855)
Homo sapiens (Human)Nuclear SET domain-containing protein 3,Protein whistle,WHSC1-like 1 isoform 9 with methyltransferase activity to lysine,Wolf-Hirschhorn syndrome candidate 1-like protein 1,WHSC1-like protein 1
8M, T
(I, L)
S-ADENOSYLMETHIONINEnon-polymer398.42Chemie (SAM)
9N, O, P, Q, R...
(I, L)
ZINC IONnon-polymer65.46Chemie (ZN)
Sequence modifications
M, E: 1 - 135 (UniProt: Q92133)
PDBExternal DatabaseDetails
Nle 36Lys 37engineered mutation
Nle 90Met 91engineered mutation
Nle 120Met 121engineered mutation
I, L: 680 - 1437 (UniProt: Q9BZ95)
PDBExternal DatabaseDetails
Lys 1181Glu 1181engineered mutation
Ala 1232Thr 1232engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight394360.2
Non-Polymers*Number of molecules8
Total formula weight1189.3
All*Total formula weight395549.5
*Water molecules are not included.

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PDB entries from 2025-06-11

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