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7CPV

Cryo-EM structure of 80S ribosome from mouse testis

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1LA60S ribosomal protein L8polymer25728088.91UniProt (P62918)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Mus musculus (Mouse)
2LB60S ribosomal protein L3polymer40346212.11UniProt (P27659)
Pfam (PF00297)
In PDB
Mus musculus (Mouse)J1 protein
3LC60S ribosomal protein L4polymer41947259.91UniProt (Q9D8E6)
Pfam (PF00573)
Pfam (PF14374)
In PDB
Mus musculus (Mouse)
4LD60S ribosomal protein L5polymer29734464.81UniProt (P47962)
Pfam (PF17144)
Pfam (PF14204)
In PDB
Mus musculus (Mouse)
5LE60S ribosomal protein L6polymer29633593.91UniProt (P47911)
Pfam (PF03868)
Pfam (PF01159)
In PDB
Mus musculus (Mouse)TAX-responsive enhancer element-binding protein 107,TAXREB107
6LF60S ribosomal protein L7polymer27031492.91UniProt (P14148)
Pfam (PF08079)
Pfam (PF00327)
In PDB
Mus musculus (Mouse)
7LG60S ribosomal protein L7apolymer26630042.71UniProt (P12970)
Pfam (PF01248)
In PDB
Mus musculus (Mouse)Surfeit locus protein 3
8LH60S ribosomal protein L9polymer19221917.51UniProt (P51410)
Pfam (PF00347)
In PDB
Mus musculus (Mouse)
9LI60S ribosomal protein L10-likepolymer21424612.01UniProt (P86048)
Pfam (PF00252)
In PDB
Mus musculus (Mouse)
10LJ60S ribosomal protein L11polymer17820288.51UniProt (Q9CXW4)
Pfam (PF00281)
Pfam (PF00673)
In PDB
Mus musculus (Mouse)
11LL60S ribosomal protein L13polymer21124364.71UniProt (P47963)
Pfam (PF01294)
In PDB
Mus musculus (Mouse)A52
12LM60S ribosomal protein L14polymer21723620.31UniProt (Q9CR57)
Pfam (PF01929)
In PDB
Mus musculus (Mouse)
13LN60S ribosomal protein L15polymer20424207.31UniProt (Q9CZM2)
Pfam (PF00827)
In PDB
Mus musculus (Mouse)
14LO60S ribosomal protein L13apolymer20323519.41UniProt (P19253)
Pfam (PF00572)
In PDB
Mus musculus (Mouse)Transplantation antigen P198,Tum-P198 antigen
15LP60S ribosomal protein L17polymer18421444.21UniProt (Q6ZWZ7)
Pfam (PF00237)
UniProt (by SIFTS) (Q9CPR4)
In PDB
Mus musculus (Mouse)
16LQ60S ribosomal protein L18polymer18821698.71UniProt (P35980)
Pfam (PF17135)
In PDB
Mus musculus (Mouse)
17LR60S ribosomal protein L19polymer19623535.31UniProt (P84099)
Pfam (PF01280)
In PDB
Mus musculus (Mouse)60S ribosomal protein L19 isoform 1
18LS60S ribosomal protein L18apolymer17620778.51UniProt (P62717)
Pfam (PF01775)
In PDB
Mus musculus (Mouse)
19LT60S ribosomal protein L21polymer16018624.01UniProt (Q9CQM8)
Pfam (PF01157)
UniProt (by SIFTS) (O09167)
In PDB
Mus musculus (Mouse)
20LU60S ribosomal protein L22polymer12814785.01UniProt (P67984)
Pfam (PF01776)
In PDB
Mus musculus (Mouse)60S ribosomal protein L22 isoform a,Heparin-binding protein HBp15
21LV60S ribosomal protein L23polymer14014892.51UniProt (P62830)
Pfam (PF00238)
In PDB
Mus musculus (Mouse)
22LW60S ribosomal protein L24polymer15717825.11UniProt (Q8BP67)
Pfam (PF01246)
In PDB
Mus musculus (Mouse)
23LX60S ribosomal protein L23apolymer15617740.21UniProt (P62751)
Pfam (PF03939)
Pfam (PF00276)
In PDB
Mus musculus (Mouse)
24LY60S ribosomal protein L26polymer14517303.41UniProt (P61255)
Pfam (PF16906)
Pfam (PF00467)
In PDB
Mus musculus (Mouse)Silica-induced gene 20 protein,SIG-20
25LZ60S ribosomal protein L27polymer13615835.81UniProt (P61358)
Pfam (PF00467)
Pfam (PF01777)
In PDB
Mus musculus (Mouse)
26La60S ribosomal protein L27apolymer14816648.61UniProt (P14115)
Pfam (PF00828)
In PDB
Mus musculus (Mouse)L29
27Lb60S ribosomal protein L29polymer16017635.21UniProt (P47915)
Pfam (PF01779)
In PDB
Mus musculus (Mouse)
28Lc60S ribosomal protein L30polymer11512805.11UniProt (P62889)
Pfam (PF01248)
In PDB
Mus musculus (Mouse)
29Ld60S ribosomal protein L31polymer12514494.91UniProt (P62900)
Pfam (PF01198)
In PDB
Mus musculus (Mouse)
30Le60S ribosomal protein L32polymer13515898.91UniProt (P62911)
Pfam (PF01655)
In PDB
Mus musculus (Mouse)
31Lf60S ribosomal protein L35apolymer11012580.81UniProt (O55142)
Pfam (PF01247)
In PDB
Mus musculus (Mouse)
32Lg60S ribosomal protein L34polymer11713325.01UniProt (Q9D1R9)
Pfam (PF01199)
In PDB
Mus musculus (Mouse)
33Lh60S ribosomal protein L35polymer12314595.71UniProt (Q6ZWV7)
Pfam (PF00831)
In PDB
Mus musculus (Mouse)
34Li60S ribosomal protein L36polymer10512290.91UniProt (Q6ZWZ4)
Pfam (PF01158)
UniProt (by SIFTS) (P47964)
In PDB
Mus musculus (Mouse)
35Lj60S ribosomal protein L37polymer9711111.01UniProt (Q9D823)
Pfam (PF01907)
In PDB
Mus musculus (Mouse)
36Lk60S ribosomal protein L38polymer708224.91UniProt (Q9JJI8)
Pfam (PF01781)
In PDB
Mus musculus (Mouse)
37LlRibosomal protein L39-likepolymer516355.71UniProt (Q9CQD0)
Pfam (PF00832)
In PDB
Mus musculus (Mouse)
38LmUbiquitin-60S ribosomal protein L40polymer12814758.41UniProt (P62984)
Pfam (PF00240)
Pfam (PF01020)
In PDB
Mus musculus (Mouse)Ubiquitin A-52 residue ribosomal protein fusion product 1
39Ln60S ribosomal protein L41polymer253473.51UniProt (P62947)
Pfam (PF05162)
In PDB
Mus musculus (Mouse)
40Lo60S ribosomal protein L36apolymer10612477.01UniProt (P83882)
Pfam (PF00935)
In PDB
Mus musculus (Mouse)60S ribosomal protein L36a-like,60S ribosomal protein L44
41Lp60S ribosomal protein L37apolymer9210299.41UniProt (P61514)
Pfam (PF01780)
In PDB
Mus musculus (Mouse)
42Lr60S ribosomal protein L28polymer13715770.61UniProt (P41105)
Pfam (PF01778)
In PDB
Mus musculus (Mouse)
43L5Mus musculus 28S ribosomal RNApolymer47311530907.41Mus musculus (Mouse)
44L7Mus musculus 5S ribosomal RNApolymer12038691.91GenBank (396138)Mus musculus (Mouse)
45L8Mus musculus 5.8S ribosomal RNApolymer15850795.01GenBank (1059793825)Mus musculus (Mouse)
46S2Mus musculus 18S ribosomal RNApolymer1870603101.91Mus musculus (Mouse)
47SA40S ribosomal protein SApolymer29532867.91UniProt (P14206)
Pfam (PF00318)
Pfam (PF16122)
In PDB
Mus musculus (Mouse)37 kDa laminin receptor precursor,37LRP,37 kDa oncofetal antigen,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,OFA/iLRP
48SB40S ribosomal protein S3apolymer26429942.01UniProt (P97351)
Pfam (PF01015)
In PDB
Mus musculus (Mouse)Protein TU-11
49SD40S ribosomal protein S3polymer24326715.31UniProt (P62908)
Pfam (PF07650)
Pfam (PF00189)
In PDB
Mus musculus (Mouse)
50SE40S ribosomal protein S4, X isoformpolymer26329654.91UniProt (P62702)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
In PDB
Mus musculus (Mouse)
51SF40S ribosomal protein S5polymer20422913.51UniProt (Q91V55)
Pfam (PF00177)
UniProt (by SIFTS) (P97461)
In PDB
Mus musculus (Mouse)Ribosomal protein S5
52SH40S ribosomal protein S7polymer19422168.91UniProt (P62082)
Pfam (PF01251)
In PDB
Mus musculus (Mouse)
53SI40S ribosomal protein S8polymer20824263.41UniProt (P62242)
Pfam (PF01201)
In PDB
Mus musculus (Mouse)
54SK40S ribosomal protein S10polymer16518951.81UniProt (P63325)
Pfam (PF03501)
In PDB
Mus musculus (Mouse)
55SL40S ribosomal protein S11polymer15818468.81UniProt (P62281)
Pfam (PF16205)
Pfam (PF00366)
In PDB
Mus musculus (Mouse)
56SP40S ribosomal protein S15polymer14517076.21UniProt (P62843)
Pfam (PF00203)
In PDB
Mus musculus (Mouse)RIG protein
57SQ40S ribosomal protein S16polymer14616477.41UniProt (P14131)
Pfam (PF00380)
In PDB
Mus musculus (Mouse)
58SR40S ribosomal protein S17polymer13515552.11UniProt (P63276)
Pfam (PF00833)
In PDB
Mus musculus (Mouse)
59SS40S ribosomal protein S18polymer15217759.81UniProt (P62270)
Pfam (PF00416)
In PDB
Mus musculus (Mouse)Ke-3,Ke3
60ST40S ribosomal protein S19polymer14516117.61UniProt (Q9CZX8)
Pfam (PF01090)
In PDB
Mus musculus (Mouse)
61SU40S ribosomal protein S20polymer11913398.81UniProt (P60867)
Pfam (PF00338)
In PDB
Mus musculus (Mouse)
62SV40S ribosomal protein S21polymer839154.41UniProt (Q9CQR2)
Pfam (PF01249)
In PDB
Mus musculus (Mouse)
63SX40S ribosomal protein S23polymer14315844.71UniProt (P62267)
Pfam (PF00164)
In PDB
Mus musculus (Mouse)
64Sa40S ribosomal protein S26polymer11513047.51UniProt (P62855)
Pfam (PF01283)
In PDB
Mus musculus (Mouse)
65Sc40S ribosomal protein S28polymer697855.11UniProt (P62858)
Pfam (PF01200)
In PDB
Mus musculus (Mouse)
66Sd40S ribosomal protein S29polymer566690.81UniProt (P62274)
Pfam (PF00253)
In PDB
Mus musculus (Mouse)
67SgReceptor of activated protein C kinase 1polymer31735115.71UniProt (P68040)
Pfam (PF00400)
In PDB
Mus musculus (Mouse)12-3,Guanine nucleotide-binding protein subunit beta-2-like 1,Receptor for activated C kinase,Receptor of activated protein kinase C 1,p205
68SC40S ribosomal protein S2polymer29331283.41UniProt (P25444)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Mus musculus (Mouse)40S ribosomal protein S4,Protein LLRep3
69SG40S ribosomal protein S6polymer24928751.91UniProt (P62754)
Pfam (PF01092)
In PDB
Mus musculus (Mouse)Phosphoprotein NP33
70SJ40S ribosomal protein S9polymer19422641.61UniProt (Q6ZWN5)
Pfam (PF00163)
Pfam (PF01479)
In PDB
Mus musculus (Mouse)
71SN40S ribosomal protein S13polymer15117259.41UniProt (P62301)
Pfam (PF08069)
Pfam (PF00312)
In PDB
Mus musculus (Mouse)
72SO40S ribosomal protein S14polymer15116302.81UniProt (P62264)
Pfam (PF00411)
In PDB
Mus musculus (Mouse)
73SW40S ribosomal protein S15apolymer13014865.61UniProt (P62245)
Pfam (PF00410)
In PDB
Mus musculus (Mouse)
74SY40S ribosomal protein S24polymer13315463.31UniProt (P62849)
Pfam (PF01282)
In PDB
Mus musculus (Mouse)
75SZ40S ribosomal protein S25polymer12513776.21UniProt (P62852)
Pfam (PF03297)
In PDB
Mus musculus (Mouse)
76Sb40S ribosomal protein S27polymer849480.21UniProt (Q6ZWU9)
Pfam (PF01667)
In PDB
Mus musculus (Mouse)
77Se40S ribosomal protein S30polymer13314441.71UniProt (Q642K5)
Pfam (PF00240)
Pfam (PF04758)
UniProt (by SIFTS) (P62862)
In PDB
Mus musculus (Mouse)
78S6Met-tRNApolymer7524231.51Mus musculus (Mouse)
79LN, L5, S2, LP, LT...MAGNESIUM IONnon-polymer24.3247Chemie (MG)
80Lg, Lj, Lm, Lo, Lp...ZINC IONnon-polymer65.47Chemie (ZN)
81waterwater18.015Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains78
Total formula weight3672923.3
Non-Polymers*Number of molecules254
Total formula weight6461.2
All*Total formula weight3679384.5
*Water molecules are not included.

224201

PDB entries from 2024-08-28

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