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7CPU

Cryo-EM structure of 80S ribosome from mouse kidney

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(LA)
60S ribosomal protein L8polymer25728088.91UniProt (P62918)
Pfam (PF00181)
Pfam (PF03947)
Mus musculus (house mouse)
2B
(SA)
40S ribosomal protein SApolymer29532867.91UniProt (P14206)
Pfam (PF00318)
Pfam (PF16122)
Mus musculus (house mouse)37 kDa laminin receptor precursor,37LRP,37 kDa oncofetal antigen,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,OFA/iLRP
3C
(LB)
60S ribosomal protein L3polymer40346212.11UniProt (P27659)
Pfam (PF00297)
Mus musculus (house mouse)J1 protein
4D
(SB)
40S ribosomal protein S3apolymer26429942.01UniProt (P97351)
Pfam (PF01015)
Mus musculus (house mouse)Protein TU-11
5E
(LC)
60S ribosomal protein L4polymer41947259.91UniProt (Q9D8E6)
Pfam (PF00573)
Pfam (PF14374)
Mus musculus (house mouse)
6F
(LD)
60S ribosomal protein L5polymer29734464.81UniProt (P47962)
Pfam (PF17144)
Pfam (PF14204)
Mus musculus (house mouse)
7G
(LE)
60S ribosomal protein L6polymer29633593.91UniProt (P47911)
Pfam (PF03868)
Pfam (PF01159)
Mus musculus (house mouse)TAX-responsive enhancer element-binding protein 107,TAXREB107
8H
(LF)
60S ribosomal protein L7polymer27031492.91UniProt (P14148)
Pfam (PF08079)
Pfam (PF00327)
Mus musculus (house mouse)
9I
(LG)
60S ribosomal protein L7apolymer26630042.71UniProt (P12970)
Pfam (PF01248)
Mus musculus (house mouse)Surfeit locus protein 3
10J
(LH)
60S ribosomal protein L9polymer19221917.51UniProt (P51410)
Pfam (PF00347)
Mus musculus (house mouse)
11K
(LI)
60S ribosomal protein L10polymer21424657.11UniProt (Q6ZWV3)
Pfam (PF00252)
Mus musculus (house mouse)Protein QM homolog,Ribosomal protein L10
12L
(LJ)
60S ribosomal protein L11polymer17820288.51UniProt (Q9CXW4)
Pfam (PF00281)
Pfam (PF00673)
Mus musculus (house mouse)
13M
(LL)
60S ribosomal protein L13polymer21124364.71UniProt (P47963)
Pfam (PF01294)
Mus musculus (house mouse)A52
14N
(LM)
60S ribosomal protein L14polymer21723620.31UniProt (Q9CR57)
Pfam (PF01929)
Mus musculus (house mouse)
15O
(LN)
60S ribosomal protein L15polymer20424207.31UniProt (Q9CZM2)
Pfam (PF00827)
Mus musculus (house mouse)
16P
(LO)
60S ribosomal protein L13apolymer20323519.41UniProt (P19253)
Pfam (PF00572)
Mus musculus (house mouse)Transplantation antigen P198,Tum-P198 antigen
17Q
(LP)
60S ribosomal protein L17polymer18421444.21UniProt (Q6ZWZ7)
Pfam (PF00237)
UniProt (by SIFTS) (Q9CPR4)
Mus musculus (house mouse)
18R
(LQ)
60S ribosomal protein L18polymer18821698.71UniProt (P35980)
Pfam (PF17135)
Mus musculus (house mouse)
19S
(LR)
60S ribosomal protein L19polymer19623535.31UniProt (P84099)
Pfam (PF01280)
Mus musculus (house mouse)60S ribosomal protein L19 isoform 1
20T
(LS)
60S ribosomal protein L18apolymer17620778.51UniProt (P62717)
Pfam (PF01775)
Mus musculus (house mouse)
21U
(LT)
60S ribosomal protein L21polymer16018624.01UniProt (Q9CQM8)
Pfam (PF01157)
UniProt (by SIFTS) (O09167)
Mus musculus (house mouse)
22V
(LU)
60S ribosomal protein L22polymer12814785.01UniProt (P67984)
Pfam (PF01776)
Mus musculus (house mouse)60S ribosomal protein L22 isoform a,Heparin-binding protein HBp15
23W
(LV)
60S ribosomal protein L23polymer14014892.51UniProt (P62830)
Pfam (PF00238)
Mus musculus (house mouse)
24X
(LW)
60S ribosomal protein L24polymer15717825.11UniProt (Q8BP67)
Pfam (PF01246)
Mus musculus (house mouse)
25Y
(LX)
60S ribosomal protein L23apolymer15617740.21UniProt (P62751)
Pfam (PF03939)
Pfam (PF00276)
Mus musculus (house mouse)
26Z
(LY)
60S ribosomal protein L26polymer14517303.41UniProt (P61255)
Pfam (PF16906)
Pfam (PF00467)
Mus musculus (house mouse)Silica-induced gene 20 protein,SIG-20
27AA
(LZ)
60S ribosomal protein L27polymer13615835.81UniProt (P61358)
Pfam (PF00467)
Pfam (PF01777)
Mus musculus (house mouse)
28BA
(La)
60S ribosomal protein L27apolymer14816648.61UniProt (P14115)
Pfam (PF00828)
Mus musculus (house mouse)L29
29CA
(Lb)
60S ribosomal protein L29polymer16017635.21UniProt (P47915)
Pfam (PF01779)
Mus musculus (house mouse)
30DA
(Lc)
60S ribosomal protein L30polymer11512805.11UniProt (P62889)
Pfam (PF01248)
Mus musculus (house mouse)
31EA
(Ld)
60S ribosomal protein L31polymer12514494.91UniProt (P62900)
Pfam (PF01198)
Mus musculus (house mouse)
32FA
(Le)
60S ribosomal protein L32polymer13515898.91UniProt (P62911)
Pfam (PF01655)
Mus musculus (house mouse)
33GA
(Lf)
60S ribosomal protein L35apolymer11012580.81UniProt (O55142)
Pfam (PF01247)
Mus musculus (house mouse)
34HA
(Lg)
60S ribosomal protein L34polymer11713325.01UniProt (Q9D1R9)
Pfam (PF01199)
Mus musculus (house mouse)
35IA
(Lh)
60S ribosomal protein L35polymer12314595.71UniProt (Q6ZWV7)
Pfam (PF00831)
Mus musculus (house mouse)
36JA
(Li)
60S ribosomal protein L36polymer10512290.91UniProt (Q6ZWZ4)
Pfam (PF01158)
UniProt (by SIFTS) (P47964)
Mus musculus (house mouse)
37KA
(Lj)
60S ribosomal protein L37polymer9711111.01UniProt (Q9D823)
Pfam (PF01907)
Mus musculus (house mouse)
38LA
(Lk)
60S ribosomal protein L38polymer708224.91UniProt (Q9JJI8)
Pfam (PF01781)
Mus musculus (house mouse)
39MA
(Lm)
Ubiquitin-60S ribosomal protein L40polymer12814758.41UniProt (P62984)
Pfam (PF00240)
Pfam (PF01020)
Mus musculus (house mouse)Ubiquitin A-52 residue ribosomal protein fusion product 1
40NA
(Ln)
60S ribosomal protein L41polymer253473.51UniProt (P62947)
Pfam (PF05162)
Mus musculus (house mouse)
41OA
(Lo)
60S ribosomal protein L36apolymer10612477.01UniProt (P83882)
Pfam (PF00935)
Mus musculus (house mouse)60S ribosomal protein L36a-like,60S ribosomal protein L44
42PA
(Lp)
60S ribosomal protein L37apolymer9210299.41UniProt (P61514)
Pfam (PF01780)
Mus musculus (house mouse)
43QA
(Lr)
60S ribosomal protein L28polymer13715770.61UniProt (P41105)
Pfam (PF01778)
Mus musculus (house mouse)
44RA
(L5)
Mus musculus 28S ribosomal RNApolymer47311530907.41Mus musculus (Mouse)
45SA
(L7)
Mus musculus 5S ribosomal RNApolymer12038691.91GenBank (396138)Mus musculus (house mouse)
46TA
(L8)
Mus musculus 5.8S ribosomal RNApolymer15850795.01GenBank (1059793825)Mus musculus (house mouse)
47UA
(S2)
Mus musculus 18S ribosomal RNApolymer1870603101.91Mus musculus (Mouse)
48VA
(SD)
40S ribosomal protein S3polymer24326715.31UniProt (P62908)
Pfam (PF07650)
Pfam (PF00189)
Mus musculus (house mouse)
49WA
(SE)
40S ribosomal protein S4, X isoformpolymer26329654.91UniProt (P62702)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Mus musculus (house mouse)
50XA
(SF)
40S ribosomal protein S5polymer20422913.51UniProt (Q91V55)
Pfam (PF00177)
UniProt (by SIFTS) (P97461)
Mus musculus (house mouse)Ribosomal protein S5
51YA
(SH)
40S ribosomal protein S7polymer19422168.91UniProt (P62082)
Pfam (PF01251)
Mus musculus (house mouse)
52ZA
(SI)
40S ribosomal protein S8polymer20824263.41UniProt (P62242)
Pfam (PF01201)
Mus musculus (house mouse)
53AB
(SK)
40S ribosomal protein S10polymer16518951.81UniProt (P63325)
Pfam (PF03501)
Mus musculus (house mouse)
54BB
(SL)
40S ribosomal protein S11polymer15818468.81UniProt (P62281)
Pfam (PF16205)
Pfam (PF00366)
Mus musculus (house mouse)
55CB
(SP)
40S ribosomal protein S15polymer14517076.21UniProt (P62843)
Pfam (PF00203)
Mus musculus (house mouse)RIG protein
56DB
(SQ)
40S ribosomal protein S16polymer14616477.41UniProt (P14131)
Pfam (PF00380)
Mus musculus (house mouse)
57EB
(SR)
40S ribosomal protein S17polymer13515552.11UniProt (P63276)
Pfam (PF00833)
Mus musculus (house mouse)
58FB
(SS)
40S ribosomal protein S18polymer15217759.81UniProt (P62270)
Pfam (PF00416)
Mus musculus (house mouse)Ke-3,Ke3
59GB
(ST)
40S ribosomal protein S19polymer14516117.61UniProt (Q9CZX8)
Pfam (PF01090)
Mus musculus (house mouse)
60HB
(SU)
40S ribosomal protein S20polymer11913398.81UniProt (P60867)
Pfam (PF00338)
Mus musculus (house mouse)
61IB
(SV)
40S ribosomal protein S21polymer839154.41UniProt (Q9CQR2)
Pfam (PF01249)
Mus musculus (house mouse)
62JB
(SX)
40S ribosomal protein S23polymer14315844.71UniProt (P62267)
Pfam (PF00164)
Mus musculus (house mouse)
63KB
(Sa)
40S ribosomal protein S26polymer11513047.51UniProt (P62855)
Pfam (PF01283)
Mus musculus (house mouse)
64LB
(Sc)
40S ribosomal protein S28polymer697855.11UniProt (P62858)
Pfam (PF01200)
Mus musculus (house mouse)
65MB
(Sd)
40S ribosomal protein S29polymer566690.81UniProt (P62274)
Pfam (PF00253)
Mus musculus (house mouse)
66NB
(Sg)
Receptor of activated protein C kinase 1polymer31735115.71UniProt (P68040)
Pfam (PF00400)
Mus musculus (house mouse)12-3,Guanine nucleotide-binding protein subunit beta-2-like 1,Receptor for activated C kinase,Receptor of activated protein kinase C 1,p205
67OB
(SC)
40S ribosomal protein S2polymer29331283.41UniProt (P25444)
Pfam (PF00333)
Pfam (PF03719)
Mus musculus (house mouse)40S ribosomal protein S4,Protein LLRep3
68PB
(SG)
40S ribosomal protein S6polymer24928751.91UniProt (P62754)
Pfam (PF01092)
Mus musculus (house mouse)Phosphoprotein NP33
69QB
(SJ)
40S ribosomal protein S9polymer19422641.61UniProt (Q6ZWN5)
Pfam (PF00163)
Pfam (PF01479)
Mus musculus (house mouse)
70RB
(SN)
40S ribosomal protein S13polymer15117259.41UniProt (P62301)
Pfam (PF08069)
Pfam (PF00312)
Mus musculus (house mouse)
71SB
(SO)
40S ribosomal protein S14polymer15116302.81UniProt (P62264)
Pfam (PF00411)
Mus musculus (house mouse)
72TB
(SW)
40S ribosomal protein S15apolymer13014865.61UniProt (P62245)
Pfam (PF00410)
Mus musculus (house mouse)
73UB
(SY)
40S ribosomal protein S24polymer13315463.31UniProt (P62849)
Pfam (PF01282)
Mus musculus (house mouse)
74VB
(SZ)
40S ribosomal protein S25polymer12513776.21UniProt (P62852)
Pfam (PF03297)
Mus musculus (house mouse)
75WB
(Sb)
40S ribosomal protein S27polymer849480.21UniProt (Q6ZWU9)
Pfam (PF01667)
Mus musculus (house mouse)
76XB
(Se)
40S ribosomal protein S30polymer13314441.71UniProt (Q642K5)
Pfam (PF00240)
Pfam (PF04758)
UniProt (by SIFTS) (P62862)
Mus musculus (house mouse)
77YB
(S6)
tRNApolymer7524231.51Mus musculus (Mouse)
78ZB
(Ll)
Ribosomal protein L39polymer516426.81UniProt (Q505A8)
Pfam (PF00832)
Mus musculus (house mouse)
79AC, AD, AE, AF, AG...
(LN, L5, S2, LP, LT...)
MAGNESIUM IONnon-polymer24.3271Chemie (MG)
80GC, HC, IC, JC, KC...
(Lg, Lj, Lm, Lo, Lp...)
ZINC IONnon-polymer65.47Chemie (ZN)
81SM, TM, UM, VM, WM...
(LB, LH, LI, La, L5...)
waterwater18.019Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains78
Total formula weight3673039.4
Non-Polymers*Number of molecules278
Total formula weight7044.5
All*Total formula weight3680083.9
*Water molecules are not included.

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PDB entries from 2025-06-18

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