7C94
Crystal structure of the anti-human podoplanin antibody Fab fragment complex with glycopeptide
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, D (A, D) | Light chain of Fab fragment | polymer | 220 | 24260.8 | 2 | Mus musculus | ||
| 2 | B, E (B, E) | Heavy chain of Fab fragment | polymer | 225 | 24145.2 | 2 | Mus musculus | ||
| 3 | C, F (C, F) | Peptide from Podoplanin | polymer | 18 | 1885.1 | 2 | UniProt (Q86YL7) | Homo sapiens | Aggrus,Glycoprotein 36,Gp36,PA2.26 antigen,T1-alpha,T1A |
| 4 | G, H (G, H) | N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose-(1-3)-[N-acetyl-alpha-neuraminic acid-(2-6)]2-acetamido-2-deoxy-alpha-D-galactopyranose | branched | 965.9 | 2 | In PDB GlyTouCan (G01614ZM) | |||
| 5 | I, N, O, S (A, D, E) | PHOSPHATE ION | non-polymer | 95.0 | 4 | Chemie (PO4) | |||
| 6 | J, K, L, M, P... (A, B, D) | GLYCEROL | non-polymer | 92.1 | 7 | Chemie (GOL) | |||
| 7 | T, U, V, W, X... (A, B, C, D, E...) | water | water | 18.0 | 21 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 100582.3 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1931.7 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 1024.5 | |
| All* | Total formula weight | 103538.5 |
