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7C8V

Structure of sybody SR4 in complex with the SARS-CoV-2 S Receptor Binding domain (RBD)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ASynthetic nanobody SR4polymer14415985.51synthetic construct
2BSpike protein S1polymer21323747.61UniProt (P0DTC2)
Pfam (PF09408)
In PDB
Severe acute respiratory syndrome coronavirus 2 (2019-nCoV)S glycoprotein,E2,Peplomer protein,Spike glycoprotein
3A, BGLYCEROLnon-polymer92.18Chemie (GOL)
4B2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
5waterwater18.0238Chemie (HOH)
Sequence modifications
B: 330 - 531 (UniProt: P0DTC2)
PDBExternal DatabaseDetails
Ala 327-expression tag
Gly 328-expression tag
Ser 329-expression tag
Gly 532-expression tag
Thr 533-expression tag
Leu 534-expression tag
Glu 535-expression tag
Val 536-expression tag
Leu 537-expression tag
Phe 538-expression tag
Gln 539-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight39733.2
Non-Polymers*Number of molecules9
Total formula weight958.0
All*Total formula weight40691.1
*Water molecules are not included.

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PDB entries from 2024-09-18

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