7B6T
Sheep Polyomavirus VP1 in complex with 10 mM globo-N-tetraose
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AAA, BBB, CCC, DDD, EEE... | Capsid protein VP1 | polymer | 276 | 30577.4 | 10 | UniProt (A0A0E3ZCF3) Pfam (PF00718) In PDB | Sheep polyomavirus 1 | |
2 | AaA, CaC, FaF, HaH | 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose-(1-4)-beta-D-galactopyranose | branched | 545.5 | 4 | In PDB GlyTouCan (G30239EK) | |||
3 | BaB, DaD, JaJ | 2-acetamido-2-deoxy-beta-D-galactopyranose-(1-3)-alpha-D-galactopyranose | branched | 383.3 | 3 | In PDB GlyTouCan (G71661JQ) | |||
4 | CCC, DDD, EEE, AAA, FFF | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 6 | Chemie (PEG) | |||
5 | HHH, CCC, DDD, III, EEE... | MAGNESIUM ION | non-polymer | 24.3 | 12 | Chemie (MG) | |||
6 | BBB, HHH, CCC, DDD, III... | POTASSIUM ION | non-polymer | 39.1 | 9 | Chemie (K) | |||
7 | HHH, CCC, III, EEE, JJJ... | 1,2-ETHANEDIOL | non-polymer | 62.1 | 18 | Chemie (EDO) | |||
8 | BBB | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 3 | Chemie (PGE) | |||
9 | III, EEE, GGG | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 3 | Chemie (MPD) | |||
10 | water | water | 18.0 | 3203 | Chemie (HOH) |
Sequence modifications
AAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH, III, JJJ: 20 - 291 (UniProt: A0A0E3ZCF3)
PDB | External Database | Details |
---|---|---|
Gly 16 | - | expression tag |
Ser 17 | - | expression tag |
His 18 | - | expression tag |
Met 19 | - | expression tag |
Ser 95 | Cys 96 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 10 |
Total formula weight | 305774.3 | |
Branched | Number of molecules | 7 |
Total formula weight | 3332.0 | |
Non-Polymers* | Number of molecules | 51 |
Total formula weight | 3202.5 | |
All* | Total formula weight | 312308.9 |