7B62
Crystal structure of SARS-CoV-2 spike protein N-terminal domain in complex with biliverdin
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Spike glycoprotein | polymer | 322 | 36394.2 | 1 | UniProt (P0DTC2) Pfam (PF16451) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV SARS-CoV-2) | S glycoprotein,E2,Peplomer protein |
| 2 | A | BILIVERDINE IX ALPHA | non-polymer | 582.6 | 1 | Chemie (BLA) | |||
| 3 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 7 | Chemie (NAG) | |||
| 4 | A | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 2 | Chemie (PG4) | |||
| 5 | A | DI(HYDROXYETHYL)ETHER | non-polymer | 106.1 | 3 | Chemie (PEG) | |||
| 6 | A | TRIETHYLENE GLYCOL | non-polymer | 150.2 | 3 | Chemie (PGE) | |||
| 7 | A | PENTAETHYLENE GLYCOL | non-polymer | 238.3 | 1 | Chemie (1PE) | |||
| 8 | water | water | 18.0 | 351 | Chemie (HOH) |
Sequence modifications
A: 1 - 311 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Ser 312 | - | expression tag |
| Ser 313 | - | expression tag |
| Gly 314 | - | expression tag |
| Leu 315 | - | expression tag |
| Glu 316 | - | expression tag |
| Val 317 | - | expression tag |
| Leu 318 | - | expression tag |
| Phe 319 | - | expression tag |
| Gln 320 | - | expression tag |
| Gly 321 | - | expression tag |
| Pro 322 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 36394.2 | |
| Non-Polymers* | Number of molecules | 17 |
| Total formula weight | 3526.7 | |
| All* | Total formula weight | 39920.9 |
