7B5K
E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | 23S rRNA | polymer | 2897 | 939607.3 | 1 | Escherichia coli K-12 | ||
2 | B | 5S rRNA | polymer | 120 | 38790.1 | 1 | GenBank (CP035706.1) | Escherichia coli K-12 | |
3 | C | 50S ribosomal protein L2 | polymer | 271 | 29663.2 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein uL2 |
4 | D | 50S ribosomal protein L3 | polymer | 209 | 22291.6 | 1 | UniProt (P60438) Pfam (PF00297) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein uL3 |
5 | E | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) In PDB | Escherichia coli K-12 | ribosomal protein uL4 |
6 | F | 50S ribosomal protein L5 | polymer | 177 | 20073.2 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein uL5 |
7 | G | 50S ribosomal protein L6 | polymer | 176 | 18801.6 | 1 | UniProt (P0AG55) Pfam (PF00347) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein uL6 |
8 | H | 50S ribosomal protein L9 | polymer | 149 | 15789.0 | 1 | UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) In PDB | Escherichia coli K-12 | ribosomal protein bL9 |
9 | J | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) In PDB | Escherichia coli K-12 | ribosomal protein uL13 |
10 | K | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) In PDB | Escherichia coli K-12 | ribosomal protein uL14 |
11 | L | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) In PDB | Escherichia coli K-12 | ribosomal protein uL15 |
12 | M | 50S ribosomal protein L16 | polymer | 136 | 15327.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein uL16 |
13 | N | 50S ribosomal protein L17 | polymer | 118 | 13505.7 | 1 | UniProt (P0AG44) Pfam (PF01196) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein bL17 |
14 | O | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) In PDB | Escherichia coli K-12 | ribosomal protein uL18 |
15 | P | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (P0A7K6) Pfam (PF01245) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein bL19 |
16 | Q | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 1 | UniProt (P0A7L3) Pfam (PF00453) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein bL20 |
17 | R | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) In PDB | Escherichia coli K-12 | ribosomal protein bL21 |
18 | S | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) In PDB | Escherichia coli K-12 | ribosomal protein uL22 |
19 | T | 50S ribosomal protein L23 | polymer | 93 | 10546.5 | 1 | UniProt (P0ADZ0) Pfam (PF00276) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein uL23 |
20 | U | 50S ribosomal protein L24 | polymer | 102 | 11078.9 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein uL24 |
21 | V | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) In PDB | Escherichia coli K-12 | ribosomal protein bL25 |
22 | W | 50S ribosomal protein L27 | polymer | 76 | 8275.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein bL27 |
23 | X | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (P0A7M2) Pfam (PF00830) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein bL28 |
24 | Y | 50S ribosomal protein L29 | polymer | 62 | 7155.3 | 1 | UniProt (P0A7M6) Pfam (PF00831) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein uL29 |
25 | Z | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (P0AG51) Pfam (PF00327) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein uL30 |
26 | 0 | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 1 | UniProt (P0A7N4) Pfam (PF01783) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein bL32 |
27 | 1 | 50S ribosomal protein L33 | polymer | 51 | 5928.0 | 1 | UniProt (P0A7N9) Pfam (PF00471) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein bL33 |
28 | 2 | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) In PDB | Escherichia coli K-12 | ribosomal protein bL34 |
29 | 3 | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (P0A7Q1) Pfam (PF01632) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein bL35,Ribosomal protein A |
30 | 4 | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) In PDB | Escherichia coli K-12 | Ribosomal protein B, ribosomal protein bL36 |
31 | 5 | 50S ribosomal protein L31 | polymer | 66 | 7516.7 | 1 | UniProt (P0A7M9) Pfam (PF01197) In PDB | Escherichia coli K-12 | Large ribosomal subunit protein bL31-A |
32 | a | 16S rRNA | polymer | 1533 | 497074.8 | 1 | Escherichia coli K-12 | ||
33 | b | 30S ribosomal protein S2 | polymer | 224 | 24971.8 | 1 | UniProt (A0A3K3SDJ5) In PDB | Escherichia coli K-12 | |
34 | c | 30S ribosomal protein S3 | polymer | 206 | 23078.8 | 1 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS3 |
35 | d | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS4 |
36 | e | 30S ribosomal protein S5 | polymer | 155 | 16361.9 | 1 | UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS5 |
37 | f | 30S ribosomal protein S6 | polymer | 106 | 12326.3 | 1 | UniProt (P02358) Pfam (PF01250) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein bS6 |
38 | g | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 1 | UniProt (P02359) Pfam (PF00177) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS7 |
39 | h | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (P0A7W7) Pfam (PF00410) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS8 |
40 | i | 30S ribosomal protein S9 | polymer | 127 | 14554.9 | 1 | UniProt (P0A7X3) Pfam (PF00380) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS9 |
41 | j | 30S ribosomal protein S10 | polymer | 99 | 11325.1 | 1 | UniProt (P0A7R5) Pfam (PF00338) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS10,Transcription termination/antitermination protein NusE |
42 | k | 30S ribosomal protein S11 | polymer | 117 | 12487.2 | 1 | UniProt (P0A7R9) Pfam (PF00411) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS11 |
43 | l | 30S ribosomal protein S12 | polymer | 123 | 13683.1 | 1 | UniProt (P0A7S3) Pfam (PF00164) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS12 |
44 | m | 30S ribosomal protein S13 | polymer | 114 | 12625.8 | 1 | UniProt (P0A7S9) Pfam (PF00416) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS13 |
45 | n | 30S ribosomal protein S14 | polymer | 101 | 11546.4 | 1 | UniProt (P0AG59) Pfam (PF00253) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS14 |
46 | o | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 1 | UniProt (P0ADZ4) Pfam (PF00312) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS15 |
47 | p | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein bS16 |
48 | q | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 1 | UniProt (P0AG63) Pfam (PF00366) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS17 |
49 | r | 30S ribosomal protein S18 | polymer | 55 | 6466.5 | 1 | UniProt (P0A7T7) Pfam (PF01084) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein bS18 |
50 | s | 30S ribosomal protein S19 | polymer | 82 | 9323.9 | 1 | UniProt (P0A7U3) Pfam (PF00203) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein uS19 |
51 | t | 30S ribosomal protein S20 | polymer | 86 | 9577.3 | 1 | UniProt (P0A7U7) Pfam (PF01649) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein bS20 |
52 | u | 30S ribosomal protein S21 | polymer | 56 | 6629.7 | 1 | UniProt (P68679) Pfam (PF01165) In PDB | Escherichia coli K-12 | Small ribosomal subunit protein bS21 |
53 | v | ermC Nacent chain | polymer | 8 | 895.1 | 1 | Escherichia coli K-12 | ||
54 | x | P-site Isoleucine tRNA (77-MER) | polymer | 77 | 24839.8 | 1 | Escherichia coli K-12 | ||
55 | z | atRNA synthetic Stop tRNA (76-MER) | polymer | 76 | 24632.7 | 1 | Escherichia coli K-12 | ||
56 | 9 | E-site val tRNA (76-MER) | polymer | 76 | 24444.5 | 1 | Escherichia coli K-12 | ||
57 | 6 | mRNA | polymer | 11 | 3491.1 | 1 | Escherichia coli K-12 | ||
58 | A, a, m, B, C... | MAGNESIUM ION | non-polymer | 24.3 | 359 | Chemie (MG) | |||
59 | A | ERYTHROMYCIN A | non-polymer | 733.9 | 1 | Chemie (ERY) | |||
60 | a | 2-[[[(3~{R},5~{R})-3-azanyl-6-(3-azanylpropylamino)-5-oxidanyl-hexanoyl]amino]-methyl-amino]ethanoic acid | non-polymer | 305.4 | 2 | Chemie (SY5) | |||
61 | water | water | 18.0 | 854 | Chemie (HOH) |
Sequence modifications
n: 1 - 101 (UniProt: P0AG59)
PDB | External Database | Details |
---|---|---|
Ala 35 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 57 |
Total formula weight | 2186704.7 | |
Non-Polymers* | Number of molecules | 362 |
Total formula weight | 10070.2 | |
All* | Total formula weight | 2196774.9 |