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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7B5K

E. coli 70S containing suppressor tRNA in the A-site stabilized by a Negamycin analogue and P-site tRNA-nascent chain.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A23S rRNApolymer2897939607.31Escherichia coli K-12
2B5S rRNApolymer12038790.11GenBank (CP035706.1)Escherichia coli K-12
3C50S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL2
4D50S ribosomal protein L3polymer20922291.61UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL3
5E50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli K-12ribosomal protein uL4
6F50S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL5
7G50S ribosomal protein L6polymer17618801.61UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL6
8H50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coli K-12ribosomal protein bL9
9J50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli K-12ribosomal protein uL13
10K50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli K-12ribosomal protein uL14
11L50S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli K-12ribosomal protein uL15
12M50S ribosomal protein L16polymer13615327.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL16
13N50S ribosomal protein L17polymer11813505.71UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL17
14O50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli K-12ribosomal protein uL18
15P50S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL19
16Q50S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL20
17R50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli K-12ribosomal protein bL21
18S50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli K-12ribosomal protein uL22
19T50S ribosomal protein L23polymer9310546.51UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL23
20U50S ribosomal protein L24polymer10211078.91UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL24
21V50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli K-12ribosomal protein bL25
22W50S ribosomal protein L27polymer768275.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL27
23X50S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL28
24Y50S ribosomal protein L29polymer627155.31UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL29
25Z50S ribosomal protein L30polymer586423.61UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli K-12Large ribosomal subunit protein uL30
26050S ribosomal protein L32polymer566332.21UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL32
27150S ribosomal protein L33polymer515928.01UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL33
28250S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli K-12ribosomal protein bL34
29350S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL35,Ribosomal protein A
30450S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli K-12Ribosomal protein B, ribosomal protein bL36
31550S ribosomal protein L31polymer667516.71UniProt (P0A7M9)
Pfam (PF01197)
In PDB		Escherichia coli K-12Large ribosomal subunit protein bL31-A
32a16S rRNApolymer1533497074.81Escherichia coli K-12
33b30S ribosomal protein S2polymer22424971.81UniProt (A0A3K3SDJ5)
In PDB		Escherichia coli K-12
34c30S ribosomal protein S3polymer20623078.81UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS3
35d30S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS4
36e30S ribosomal protein S5polymer15516361.91UniProt (P0A7W1)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS5
37f30S ribosomal protein S6polymer10612326.31UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS6
38g30S ribosomal protein S7polymer15116861.51UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS7
39h30S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS8
40i30S ribosomal protein S9polymer12714554.91UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS9
41j30S ribosomal protein S10polymer9911325.11UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS10,Transcription termination/antitermination protein NusE
42k30S ribosomal protein S11polymer11712487.21UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS11
43l30S ribosomal protein S12polymer12313683.11UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS12
44m30S ribosomal protein S13polymer11412625.81UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS13
45n30S ribosomal protein S14polymer10111546.41UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS14
46o30S ribosomal protein S15polymer8810159.61UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS15
47p30S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS16
48q30S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS17
49r30S ribosomal protein S18polymer556466.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS18
50s30S ribosomal protein S19polymer829323.91UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli K-12Small ribosomal subunit protein uS19
51t30S ribosomal protein S20polymer869577.31UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS20
52u30S ribosomal protein S21polymer566629.71UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli K-12Small ribosomal subunit protein bS21
53vermC Nacent chainpolymer8895.11Escherichia coli K-12
54xP-site Isoleucine tRNA (77-MER)polymer7724839.81Escherichia coli K-12
55zatRNA synthetic Stop tRNA (76-MER)polymer7624632.71Escherichia coli K-12
569E-site val tRNA (76-MER)polymer7624444.51Escherichia coli K-12
576mRNApolymer113491.11Escherichia coli K-12
58A, a, m, B, C...MAGNESIUM IONnon-polymer24.3359Chemie (MG)
59AERYTHROMYCIN Anon-polymer733.91Chemie (ERY)
60a2-[[[(3~{R},5~{R})-3-azanyl-6-(3-azanylpropylamino)-5-oxidanyl-hexanoyl]amino]-methyl-amino]ethanoic acidnon-polymer305.42Chemie (SY5)
61waterwater18.0854Chemie (HOH)
Sequence modifications
n: 1 - 101 (UniProt: P0AG59)
PDBExternal DatabaseDetails
Ala 35-insertion
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains57
Total formula weight2186704.7
Non-Polymers*Number of molecules362
Total formula weight10070.2
All*Total formula weight2196774.9
*Water molecules are not included.

224004

PDB entries from 2024-08-21

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