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7B3C

Structure of elongating SARS-CoV-2 RNA-dependent RNA polymerase with Remdesivir at position -4 (structure 2)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
RNA-directed RNA polymerase nsp12polymer935107053.21UniProt (P0DTD1)
Pfam (PF06478)
Pfam (PF00680)
Severe acute respiratory syndrome coronavirus 2Pol,RdRp,Non-structural protein 12,nsp12
2B
(B)
Non-structural protein 8polymer20122175.31UniProt (P0DTD1)
Pfam (PF08717)
Severe acute respiratory syndrome coronavirus 2nsp8
3C
(C)
Non-structural protein 7polymer869521.11UniProt (P0DTD1)
Pfam (PF08716)
Severe acute respiratory syndrome coronavirus 2nsp7
4D
(P)
DNA/RNA (5'-R(P*CP*UP*AP*CP*GP*CP*A)-D(P*(RMP))-R(P*GP*UP*G)-3')polymer154831.91Severe acute respiratory syndrome coronavirus 2
5E
(T)
RNA (5'-R(P*UP*CP*AP*CP*UP*UP*GP*CP*GP*UP*AP*G)-3')polymer5718138.71Severe acute respiratory syndrome coronavirus 2
6F, G
(A)
ZINC IONnon-polymer65.42Chemie (ZN)
Sequence modifications
A: 1 - 932 (UniProt: P0DTD1)
PDBExternal DatabaseDetails
Ser -2-expression tag
Asn -1-expression tag
Ala 0-expression tag
B: 1 - 198 (UniProt: P0DTD1)
PDBExternal DatabaseDetails
Ser -2-expression tag
Asn -1-expression tag
Ala 0-expression tag
C: 1 - 83 (UniProt: P0DTD1)
PDBExternal DatabaseDetails
Ser -2-expression tag
Asn -1-expression tag
Ala 0-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains5
Total formula weight161720.2
Non-Polymers*Number of molecules2
Total formula weight130.8
All*Total formula weight161851.0
*Water molecules are not included.

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PDB entries from 2024-10-30

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