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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

7B0N

A 3.7-angstrom structure of Yarrowia lipolytica complex I with an R121M mutation in NUCM.

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1ANADH-ubiquinone oxidoreductase chain 3polymer12814506.31UniProt (S5TMS4)
Pfam (PF00507)
In PDB		Yarrowia lipolytica
2BSubunit NUKM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer21023455.21UniProt (Q9UUT7)
Pfam (PF01058)
In PDB		Yarrowia lipolytica
3CNUGM proteinpolymer29333644.91UniProt (Q9UUU0)
Pfam (PF00329)
In PDB		Yarrowia lipolytica
4DNUCM proteinpolymer46652468.91UniProt (Q9UUU1)
Pfam (PF00346)
In PDB		Yarrowia lipolytica
5ESubunit NUHM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer24327247.41UniProt (Q9UUT9)
Pfam (PF01257)
In PDB		Yarrowia lipolytica
6FSubunit NUBM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer48853829.51UniProt (Q9UUU2)
Pfam (PF01512)
Pfam (PF10531)
Pfam (PF10589)
In PDB		Yarrowia lipolytica
7GSubunit NUAM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer72879088.11UniProt (Q9UUU3)
Pfam (PF10588)
Pfam (PF00384)
Pfam (PF09326)
Pfam (PF13510)
In PDB		Yarrowia lipolytica
8HNADH-ubiquinone oxidoreductase chain 1polymer34138389.31UniProt (S5U3V2)
Pfam (PF00146)
In PDB		Yarrowia lipolytica
9ISubunit NUIM of protein NADH:Ubiquinone Oxidoreductase (Complex I)polymer19321890.81UniProt (Q9UUT8)
Pfam (PF12838)
In PDB		Yarrowia lipolyticaSubunit NUIM of protein NADH:Ubiquinone oxidoreductase
10JNADH-ubiquinone oxidoreductase chain 6polymer18520793.11UniProt (S5U3X7)
Pfam (PF00499)
In PDB		Yarrowia lipolytica
11KNADH-ubiquinone oxidoreductase chain 4Lpolymer899843.91UniProt (S5U4U1)
Pfam (PF00420)
In PDB		Yarrowia lipolytica
12LNADH-ubiquinone oxidoreductase chain 5polymer65573768.71UniProt (S5TF58)
Pfam (PF00662)
Pfam (PF00361)
In PDB		Yarrowia lipolytica
13MNADH-ubiquinone oxidoreductase chain 4polymer48654534.71UniProt (S5TMP9)
Pfam (PF00361)
In PDB		Yarrowia lipolytica
14NNADH dehydrogenase subunit 2polymer46953381.41UniProt (S5U4R9)
Pfam (PF00361)
In PDB		Yarrowia lipolytica
15OSubunit NUXM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer16918588.21UniProt (A0A1D8NKB4)
Pfam (PF10785)
Pfam (PF12853)
In PDB		Yarrowia lipolytica
16PEpimerase domain-containing proteinpolymer35540488.91UniProt (A0A371BY45)
Pfam (PF01370)
In PDB		Yarrowia lipolytica
17QSubunit NUYM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer16118656.11UniProt (A0A1D8N7X0)
Pfam (PF04800)
In PDB		Yarrowia lipolytica
18Rzf-CHCC domain-containing proteinpolymer11813133.61UniProt (A0A1H6Q8Z5)
Pfam (PF10276)
In PDB		Yarrowia lipolytica
19SSubunit NI8M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer879621.11UniProt (A0A1H6PJS3)
Pfam (PF05047)
In PDB		Yarrowia lipolytica
20TAcyl carrier proteinpolymer818821.81UniProt (A0A1H6PXT9)
Pfam (PF00550)
In PDB		Yarrowia lipolytica
21UAcyl carrier proteinpolymer889533.61UniProt (A0A1D8NG21)
Pfam (PF00550)
In PDB		Yarrowia lipolytica
22VSubunit NUFM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer14416657.91UniProt (A0A371C5F3)
Pfam (PF04716)
In PDB		Yarrowia lipolytica
23WSubunit NB4M of protein NADH:Ubiquinone Oxidoreductase (Complex I)polymer12414778.81UniProt (A0A1D8N3C8)
Pfam (PF05347)
In PDB		Yarrowia lipolytica
24XSubunit NUPM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer17219355.21UniProt (A0A371C2D0)
Pfam (PF06747)
In PDB		Yarrowia lipolytica
25YComplex I-B14.7polymer18018966.51UniProt (A0A371CB65)
In PDB		Yarrowia lipolyticaNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 11,NADH-ubiquinone oxidoreductase subunit B14.7
26ZGRIM-19polymer12213981.21UniProt (A0A1H6PPE5)
Pfam (PF06212)
In PDB		Yarrowia lipolytica
27aNADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 1polymer869675.01UniProt (A0A1D8NC63)
Pfam (PF15879)
In PDB		Yarrowia lipolytica
28bsubunit NI9M of protein NADH:Ubiquinone Oxidoreductase (Complex I)polymer788992.21UniProt (A0A1D8NJR0)
In PDB		Yarrowia lipolytica
29cSubunit NUZM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer18219772.51UniProt (A0A1D8N3H5)
In PDB		Yarrowia lipolytica
30dsubunit NEBM of protein NADH:Ubiquinone Oxidoreductase (Complex I) [Yarrowia lipolytica]polymer737928.21UniProt (A0A1D8NGI5)
In PDB		Yarrowia lipolytica
31eSubunit NIPM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer8910035.71UniProt (A0A1D8NNZ0)
Pfam (PF10200)
In PDB		Yarrowia lipolytica
32fSubunit N7BM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer13816175.11UniProt (A0A1D8N5V2)
Pfam (PF05071)
In PDB		Yarrowia lipolytica
33gSubunit NESM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer24928479.91UniProt (Q6ZY23)
In PDB		Yarrowia lipolytica
34hsubunit NUNM of protein NADH:Ubiquinone Oxidoreductase (Complex I)polymer13915818.81UniProt (A0A371CFV9)
In PDB		Yarrowia lipolytica
35iSubunit NUUM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer909794.01UniProt (A0A1H6Q311)
In PDB		Yarrowia lipolytica
36jSubunit NUVM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer677807.11UniProt (A0A1D8NFX6)
In PDB		Yarrowia lipolytica
37kSubunit NB2M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer606948.91UniProt (A0A371C0F2)
Pfam (PF08122)
In PDB		Yarrowia lipolytica
38lSubunit NIAM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer14917328.51UniProt (A0A1D8ND94)
Pfam (PF05821)
In PDB		Yarrowia lipolytica
39mSubunit NB5M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer9310494.91UniProt (Q6ZY24)
In PDB		Yarrowia lipolytica
40nSubunit NI2M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer10912902.91UniProt (A0A1D8NDL1)
In PDB		Yarrowia lipolytica
41oSubunit NB8M of NADH:Ubiquinone Oxidoreductase (Complex I)polymer9911219.01UniProt (A0A1H6PKH9)
Pfam (PF05676)
In PDB		Yarrowia lipolytica
42pSubunit NIDM of NADH:Ubiquinone Oxidoreductase (Complex I)polymer9211039.31UniProt (A0A1D8N596)
Pfam (PF10249)
In PDB		Yarrowia lipolytica
43L, N, D, H, dDIUNDECYL PHOSPHATIDYL CHOLINEnon-polymer622.86Chemie (PLC)
44E, GFE2/S2 (INORGANIC) CLUSTERnon-polymer175.82Chemie (FES)
45FFLAVIN MONONUCLEOTIDEnon-polymer456.31Chemie (FMN)
46I, F, GIRON/SULFUR CLUSTERnon-polymer351.65Chemie (SF4)
47I, d, g, L, M...1,2-Distearoyl-sn-glycerophosphoethanolaminenon-polymer748.113Chemie (3PE)
48M, O, Z, a, bCARDIOLIPINnon-polymer1464.05Chemie (CDL)
49PNADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATEnon-polymer745.41Chemie (NDP)
50RZINC IONnon-polymer65.41Chemie (ZN)
51T, U~{S}-[2-[3-[[(2~{R})-3,3-dimethyl-2-oxidanyl-4-phosphonooxy-butanoyl]amino]propanoylamino]ethyl] (3~{S})-3-oxidanyltetradecanethioatenon-polymer584.72Chemie (EHZ)
52YDODECYL-BETA-D-MALTOSIDEnon-polymer510.62Chemie (LMT)
Sequence modifications
C: 1 - 281 (UniProt: Q9UUU0)
PDBExternal DatabaseDetails
Ala 282-expression tag
Ala 283-expression tag
Ala 284-expression tag
Ala 285-expression tag
Ala 286-expression tag
Ala 287-expression tag
His 288-expression tag
His 289-expression tag
His 290-expression tag
His 291-expression tag
His 292-expression tag
His 293-expression tag
D: 1 - 466 (UniProt: Q9UUU1)
PDBExternal DatabaseDetails
Met 121Arg 121engineered mutation
J: 2 - 185 (UniProt: S5U3X7)
PDBExternal DatabaseDetails
Fme 1-initiating methionine
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains42
Total formula weight963837.0
Non-Polymers*Number of molecules38
Total formula weight26349.7
All*Total formula weight990186.8
*Water molecules are not included.

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PDB entries from 2024-05-15

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