7ARD
Cryo-EM structure of Polytomella Complex-I (complete composition)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | ND3 | polymer | 154 | 17828.6 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 2 | B | PSST | polymer | 164 | 18158.2 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 3 | C | ND9 | polymer | 217 | 25689.1 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 4 | D | ND7 | polymer | 395 | 45263.0 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 5 | E | 24 kDa | polymer | 276 | 30186.5 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 6 | F | 51 kDa | polymer | 469 | 51593.9 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 7 | G | 75 kDa | polymer | 720 | 77364.3 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 8 | H | ND1 | polymer | 293 | 31829.8 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 9 | I | TYKY | polymer | 229 | 26140.5 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 10 | J | ND6 | polymer | 145 | 15938.1 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 11 | K | ND4L | polymer | 127 | 13836.1 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 12 | L | ND5 | polymer | 536 | 58317.4 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 13 | M | ND4 | polymer | 438 | 48407.1 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 14 | N | ND2 | polymer | 375 | 41939.4 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 15 | O | C1-FDX | polymer | 200 | 23115.1 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 16 | P | 39 kDa | polymer | 370 | 41233.0 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 17 | Q | 18 kDa | polymer | 185 | 20800.8 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 18 | R | 13 kDa | polymer | 132 | 14346.2 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 19 | S | B8 | polymer | 98 | 10509.9 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 20 | T | SDAP1 | polymer | 123 | 13409.2 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 21 | U | SDAP2 | polymer | 122 | 13393.1 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 22 | V | B13 | polymer | 159 | 17745.2 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 23 | W | B14 | polymer | 137 | 16134.9 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 24 | X | PGIV | polymer | 100 | 11758.5 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 25 | Y | B14.7 | polymer | 206 | 22521.6 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 26 | Z | B16.6 | polymer | 142 | 16261.7 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 27 | a | MWFE | polymer | 71 | 8504.5 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 28 | b | B9 | polymer | 54 | 4613.7 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 29 | c | KFYI | polymer | 110 | 12554.1 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 30 | d | B14.5b | polymer | 83 | 9575.0 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 31 | e | 15 kDa | polymer | 75 | 8915.2 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 32 | f | MNLL | polymer | 121 | 13507.2 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 33 | g | ESSS | polymer | 172 | 19333.2 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 34 | h | NUOP4 | polymer | 81 | 9145.3 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 35 | i | NUOP5 | polymer | 128 | 15118.8 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 36 | j | AGGG | polymer | 87 | 7422.1 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 37 | k | B12 | polymer | 55 | 6332.2 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 38 | l | ASHI | polymer | 151 | 16986.6 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 39 | m | B15 | polymer | 138 | 16276.2 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 40 | n | Complex I-B22 | polymer | 121 | 14418.6 | 1 | UniProt (A0A024FSS5) Pfam (PF05347) In PDB | Polytomella sp. Pringsheim 198.80 | NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9,NADH-ubiquinone oxidoreductase B22 subunit |
| 41 | o | B18 | polymer | 85 | 10293.0 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 42 | p | PDSW | polymer | 156 | 18434.9 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 43 | q | B17.2 | polymer | 155 | 18178.4 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 44 | r | B14.5a | polymer | 121 | 13827.0 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 45 | s | NUOP7 | polymer | 118 | 13476.5 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 46 | t | NUOP8 | polymer | 134 | 15743.9 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 47 | u | unknown | polymer | 50 | 4273.3 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 48 | w | unknown | polymer | 41 | 3507.3 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 49 | x | CAL | polymer | 280 | 31348.4 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 50 | y | CA2 | polymer | 310 | 33201.9 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 51 | z | CA3 | polymer | 227 | 24150.5 | 1 | Polytomella sp. Pringsheim 198.80 | ||
| 52 | z, L, M, N, A | (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE | non-polymer | 763.1 | 7 | Chemie (PC7) | |||
| 53 | B, F, G, I | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 6 | Chemie (SF4) | |||
| 54 | E, G | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
| 55 | F | FLAVIN MONONUCLEOTIDE | non-polymer | 456.3 | 1 | Chemie (FMN) | |||
| 56 | m, H, L, M, N... | PHOSPHATIDYLETHANOLAMINE | non-polymer | 734.0 | 7 | Chemie (PTY) | |||
| 57 | t, L, M, N, d | CARDIOLIPIN | non-polymer | 1464.0 | 5 | Chemie (CDL) | |||
| 58 | P | NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE | non-polymer | 745.4 | 1 | Chemie (NDP) | |||
| 59 | R | ZINC ION | non-polymer | 65.4 | 1 | Chemie (ZN) | |||
| 60 | n, W | S-[2-({N-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-beta-alanyl}amino)ethyl] dodecanethioate | non-polymer | 540.7 | 2 | Chemie (8Q1) | |||
| 61 | water | water | 18.0 | 782 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 51 |
| Total formula weight | 1072858.9 | |
| Non-Polymers* | Number of molecules | 32 |
| Total formula weight | 22610.1 | |
| All* | Total formula weight | 1095469.1 |
