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7APZ

CLIP peptide bound to chicken MHC class II molecule (BL-2) from B2 haplotype with a decamer mode of binding

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AMHC class II alpha chainpolymer18421234.81UniProt (Q4U5Z6)
Pfam (PF00993)
Pfam (PF07654)
In PDB
Gallus gallus (Chicken)MHC class II antigen alpha,MHC class II antigen alpha chain
2BMHC class II beta chain 2polymer22525009.01UniProt (B5BSA0)
Pfam (PF00969)
Pfam (PF07654)
In PDB
Gallus gallus (Chicken)
3A, BIMIDAZOLEnon-polymer69.12Chemie (IMD)
4A, BACETYL GROUPnon-polymer44.110Chemie (ACE)
5B, AZINC IONnon-polymer65.410Chemie (ZN)
6ADI(HYDROXYETHYL)ETHERnon-polymer106.11Chemie (PEG)
7B2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.22Chemie (NAG)
8BNICKEL (II) IONnon-polymer58.71Chemie (NI)
9waterwater18.0126Chemie (HOH)
Sequence modifications
A: 5 - 185 (UniProt: Q4U5Z6)
PDBExternal DatabaseDetails
Asp 2-expression tag
Arg 3-expression tag
Arg 4-expression tag
B: 4 - 198 (UniProt: B5BSA0)
PDBExternal DatabaseDetails
Lys -26-expression tag
Met -25-expression tag
Ser -24-expression tag
Met -23-expression tag
Ser -22-expression tag
Thr -21-expression tag
Met -20-expression tag
Asn -19-expression tag
Met -18-expression tag
Pro -17-expression tag
Met -16-expression tag
Ala -15-expression tag
Met -14-expression tag
Lys -13-expression tag
Val -12-expression tag
Gly -11-expression tag
Gly -11-expression tag
Gly -11-expression tag
Gly -11-expression tag
Ser -11-expression tag
Gly -11-expression tag
Gly -11-expression tag
Gly -9-expression tag
Gly -8-expression tag
Ser -7-expression tag
Gly -1-expression tag
Gly 0-expression tag
Gly 1-expression tag
Gly 2-expression tag
Ser 3-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight46243.8
Non-Polymers*Number of molecules26
Total formula weight1840.0
All*Total formula weight48083.8
*Water molecules are not included.

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PDB entries from 2024-06-12

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