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7AJZ

The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with NAG-NAM(tetrapeptide)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, B
(A, B)
L,D-transpeptidase YcbBpolymer52359855.32UniProt (A0A655UKB5)
Pfam (PF20142)
Pfam (PF01471)
Pfam (PF03734)
UniProt (by SIFTS) (Q9KSI8)
Vibrio cholerae
2C
(C)
NAG-NAM(tetrapeptide)polymer4461.51synthetic construct
3D, E
(A, B)
1,2-ETHANEDIOLnon-polymer62.12Chemie (EDO)
4F
(C)
methyl 2-acetamido-3-O-[(1R)-1-carboxyethyl]-2-deoxy-beta-D-glucopyranosidenon-polymer307.31Chemie (AMV)synthetic construct[4-({5-amino-3-[(4-cyanophenyl)amino]-1H-1,2,4-triazole-1-carbonyl}amino)phenoxy]acetic acid
5G, H
(A, B)
waterwater18.024Chemie (HOH)
Sequence modifications
A, B: 22 - 523 (UniProt: A0A655UKB5)
PDBExternal DatabaseDetails
Ala 17-expression tag
Ala 18-expression tag
Met 19-expression tag
Val 20-expression tag
Thr 21-expression tag
Glu 524-expression tag
Asn 525-expression tag
Leu 526-expression tag
Tyr 527-expression tag
Phe 528-expression tag
Gln 529-expression tag
Gly 530-expression tag
Ser 531-expression tag
Ser 532-expression tag
Ser 533-expression tag
His 534-expression tag
His 535-expression tag
His 536-expression tag
His 537-expression tag
His 538-expression tag
His 539-expression tag
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight120172.0
Non-Polymers*Number of molecules3
Total formula weight431.4
All*Total formula weight120603.5
*Water molecules are not included.

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PDB entries from 2024-11-13

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