7AJO
The X-ray Structure of L,D-transpeptidase LdtA from Vibrio cholerae in complex with the cross-linking reaction intermediate
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | L,D-transpeptidase YcbB | polymer | 523 | 60418.0 | 1 | UniProt (A0A655UKB5) Pfam (PF20142) Pfam (PF01471) Pfam (PF03734) UniProt (by SIFTS) (Q9KSI8) In PDB | Vibrio cholerae | |
2 | A | 1,2-ETHANEDIOL | non-polymer | 62.1 | 1 | Chemie (EDO) | |||
3 | A | (2~{S},6~{S})-2-azanyl-6-[[(4~{R})-4-azanyl-5-oxidanyl-5-oxidanylidene-pentanoyl]amino]heptanedioic acid | non-polymer | 319.3 | 1 | Chemie (S2K) | |||
4 | water | water | 18.0 | 466 | Chemie (HOH) |
Sequence modifications
A: 22 - 523 (UniProt: A0A655UKB5)
PDB | External Database | Details |
---|---|---|
Ala 17 | - | expression tag |
Ala 18 | - | expression tag |
Mse 19 | - | expression tag |
Val 20 | - | expression tag |
Thr 21 | - | expression tag |
Glu 524 | - | expression tag |
Asn 525 | - | expression tag |
Leu 526 | - | expression tag |
Tyr 527 | - | expression tag |
Phe 528 | - | expression tag |
Gln 529 | - | expression tag |
Gly 530 | - | expression tag |
Ser 531 | - | expression tag |
Ser 532 | - | expression tag |
Ser 533 | - | expression tag |
His 534 | - | expression tag |
His 535 | - | expression tag |
His 536 | - | expression tag |
His 537 | - | expression tag |
His 538 | - | expression tag |
His 539 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 1 |
Total formula weight | 60418.0 | |
Non-Polymers* | Number of molecules | 2 |
Total formula weight | 381.4 | |
All* | Total formula weight | 60799.4 |