7AD1
Cryo-EM structure of a prefusion stabilized SARS-CoV-2 Spike (D614N, R682S, R685G, A892P, A942P and V987P)(One up trimer)
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein,Envelope glycoprotein,Spike glycoprotein,Envelope glycoprotein,SARS-CoV-2 S protein | polymer | 1297 | 142547.3 | 3 | UniProt (P0DTC2) UniProt (M1E1E4) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) Pfam (PF07921) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
2 | E, F, G, H, I... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 10 | In PDB GlyTouCan (G42666HT) | |||
3 | A, B, C | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 10 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1208 (UniProt: P0DTC2)
A, B, C: 1211 - 1238 (UniProt: M1E1E4)
A, B, C: 1242 - 1297 (PDB: 7AD1)
PDB | External Database | Details |
---|---|---|
Asn 614 | Asp 614 | conflict |
Ser 682 | Arg 682 | conflict |
Gly 685 | Arg 685 | conflict |
Pro 892 | Ala 892 | conflict |
Pro 942 | Ala 942 | conflict |
Pro 987 | Val 987 | conflict |
Gly 1209 | - | linker |
Ser 1210 | - | linker |
PDB | External Database | Details |
---|---|---|
Arg 1239 | - | linker |
Ser 1240 | - | linker |
Leu 1241 | - | linker |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 427642.0 | |
Branched | Number of molecules | 10 |
Total formula weight | 4244.0 | |
Non-Polymers* | Number of molecules | 10 |
Total formula weight | 2212.1 | |
All* | Total formula weight | 434098.1 |