7ABZ

Structure of pre-accomodated trans-translation complex on E. coli stalled ribosome.

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	1	23S ribosomal RNA	polymer	2904	941832.6	1		Escherichia coli K-12
2	2	16S ribosomal RNA	polymer	1540	499215.0	1		Escherichia coli K-12
3	3	5S ribosomal RNA	polymer	118	38177.8	1		Escherichia coli K-12
4	4	transfer-messenger RNA (tmRNA)	polymer	363	117212.3	1		Escherichia coli K-12
5	5	SsrA-binding protein	polymer	146	16776.3	1	UniProt (P0A832) Pfam (PF01668) In PDB	Escherichia coli K-12	Small protein B
6	6	Elongation factor Tu 2	polymer	394	43370.5	1	UniProt (P0CE48) Pfam (PF00009) Pfam (PF03144) Pfam (PF03143) In PDB	Escherichia coli K-12	EF-Tu 2,Bacteriophage Q beta RNA-directed RNA polymerase subunit III,P-43
7	7	tRNA-Phe	polymer	76	24746.0	1		Escherichia coli K-12
8	8	mRNA	polymer	15	4889.9	1		Escherichia coli K-12
9	A	50S ribosomal protein L27	polymer	80	8547.8	1	UniProt (A0A4S5B340) In PDB	Escherichia coli K-12
10	B	50S ribosomal protein L2	polymer	271	29663.2	1	UniProt (P60422) Pfam (PF00181) Pfam (PF03947) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL2
11	C	50S ribosomal protein L3	polymer	209	22277.5	1	UniProt (P60438) Pfam (PF00297) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL3
12	D	50S ribosomal protein L4	polymer	201	22121.6	1	UniProt (P60723) Pfam (PF00573) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL4
13	E	50S ribosomal protein L5	polymer	177	20073.2	1	UniProt (P62399) Pfam (PF00673) Pfam (PF00281) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL5
14	F	50S ribosomal protein L6	polymer	176	18801.6	1	UniProt (P0AG55) Pfam (PF00347) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL6
15	G	50S ribosomal protein L9	polymer	149	15789.0	1	UniProt (P0A7R1) Pfam (PF01281) Pfam (PF03948) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL9
16	H	50S ribosomal protein L10	polymer	130	13981.1	1	UniProt (P0A7J3) Pfam (PF00466) In PDB	Escherichia coli K-12	50S ribosomal protein L8,Large ribosomal subunit protein uL10
17	I	50S ribosomal protein L11	polymer	142	14894.4	1	UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL11
18	J	50S ribosomal protein L13	polymer	142	16050.6	1	UniProt (P0AA10) Pfam (PF00572) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL13
19	K	50S ribosomal protein L14	polymer	122	13451.9	1	UniProt (P0ADY3) Pfam (PF00238) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL14
20	L	50S ribosomal protein L15	polymer	144	15008.5	1	UniProt (P02413) Pfam (PF00828) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL15
21	M	50S ribosomal protein L16	polymer	136	15327.3	1	UniProt (P0ADY7) Pfam (PF00252) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL16
22	N	50S ribosomal protein L17	polymer	120	13721.9	1	UniProt (P0AG44) Pfam (PF01196) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL17
23	O	50S ribosomal protein L18	polymer	116	12663.5	1	UniProt (P0C018) Pfam (PF00861) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL18
24	P	50S ribosomal protein L19	polymer	114	13028.1	1	UniProt (P0A7K6) Pfam (PF01245) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL19
25	Q	50S ribosomal protein L20	polymer	117	13396.8	1	UniProt (P0A7L3) Pfam (PF00453) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL20
26	R	50S ribosomal protein L21	polymer	103	11586.4	1	UniProt (P0AG48) Pfam (PF00829) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL21
27	S	50S ribosomal protein L22	polymer	110	12253.4	1	UniProt (P61175) Pfam (PF00237) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL22
28	T	50S ribosomal protein L23	polymer	93	10546.5	1	UniProt (P0ADZ0) Pfam (PF00276) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL23
29	U	50S ribosomal protein L24	polymer	102	11078.9	1	UniProt (P60624) Pfam (PF00467) Pfam (PF17136) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL24
30	V	50S ribosomal protein L25	polymer	94	10713.5	1	UniProt (P68919) Pfam (PF01386) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL25
31	X	50S ribosomal protein L28	polymer	77	8896.4	1	UniProt (P0A7M2) Pfam (PF00830) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL28
32	Y	50S ribosomal protein L29	polymer	62	7155.3	1	UniProt (P0A7M6) Pfam (PF00831) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL29
33	Z	50S ribosomal protein L30	polymer	58	6423.6	1	UniProt (P0AG51) Pfam (PF00327) In PDB	Escherichia coli K-12	Large ribosomal subunit protein uL30
34	b	50S ribosomal protein L32	polymer	56	6332.2	1	UniProt (P0A7N4) Pfam (PF01783) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL32
35	c	50S ribosomal protein L33	polymer	50	5814.8	1	UniProt (P0A7N9) Pfam (PF00471) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL33
36	d	50S ribosomal protein L34	polymer	46	5397.5	1	UniProt (P0A7P5) Pfam (PF00468) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL34
37	e	50S ribosomal protein L35	polymer	64	7181.8	1	UniProt (P0A7Q1) Pfam (PF01632) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL35,Ribosomal protein A
38	f	50S ribosomal protein L36	polymer	38	4377.4	1	UniProt (P0A7Q6) Pfam (PF00444) In PDB	Escherichia coli K-12	Large ribosomal subunit protein bL36-A,Ribosomal protein B
39	g	30S ribosomal protein S2	polymer	224	24971.8	1	UniProt (P0A7V0) Pfam (PF00318) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS2
40	h	30S ribosomal protein S3	polymer	206	23078.8	1	UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS3
41	i	30S ribosomal protein S4	polymer	205	23383.0	1	UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS4
42	j	30S ribosomal protein S5	polymer	167	17659.4	1	UniProt (P0A7W1) Pfam (PF00333) Pfam (PF03719) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS5
43	k	30S ribosomal protein S6	polymer	100	11669.4	1	UniProt (P02358) Pfam (PF01250) In PDB	Escherichia coli K-12	Small ribosomal subunit protein bS6
44	l	30S ribosomal protein S7	polymer	151	16861.5	1	UniProt (P02359) Pfam (PF00177) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS7
45	m	30S ribosomal protein S8	polymer	129	14015.4	1	UniProt (P0A7W7) Pfam (PF00410) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS8
46	n	30S ribosomal protein S9	polymer	127	14554.9	1	UniProt (P0A7X3) Pfam (PF00380) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS9
47	o	30S ribosomal protein S10	polymer	98	11197.0	1	UniProt (P0A7R5) Pfam (PF00338) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS10
48	p	30S ribosomal protein S11	polymer	117	12487.2	1	UniProt (P0A7R9) Pfam (PF00411) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS11
49	q	30S ribosomal protein S12	polymer	123	13683.1	1	UniProt (P0A7S3) Pfam (PF00164) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS12
50	r	30S ribosomal protein S13	polymer	114	12625.8	1	UniProt (P0A7S9) Pfam (PF00416) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS13
51	s	30S ribosomal protein S14	polymer	100	11475.4	1	UniProt (P0AG59) Pfam (PF00253) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS14
52	t	30S ribosomal protein S15	polymer	88	10159.6	1	UniProt (P0ADZ4) Pfam (PF00312) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS15
53	u	30S ribosomal protein S16	polymer	82	9207.6	1	UniProt (P0A7T3) Pfam (PF00886) In PDB	Escherichia coli K-12	Small ribosomal subunit protein bS16
54	v	30S ribosomal protein S17	polymer	80	9263.9	1	UniProt (P0AG63) Pfam (PF00366) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS17
55	w	30S ribosomal protein S18	polymer	55	6466.5	1	UniProt (P0A7T7) Pfam (PF01084) In PDB	Escherichia coli K-12	Small ribosomal subunit protein bS18
56	x	30S ribosomal protein S19	polymer	79	9057.6	1	UniProt (P0A7U3) Pfam (PF00203) In PDB	Escherichia coli K-12	Small ribosomal subunit protein uS19
57	y	30S ribosomal protein S20	polymer	85	9506.2	1	UniProt (P0A7U7) Pfam (PF01649) In PDB	Escherichia coli K-12	Small ribosomal subunit protein bS20
58	z	30S ribosomal protein S21	polymer	56	6629.7	1	UniProt (P68679) Pfam (PF01165) In PDB	Escherichia coli K-12	Small ribosomal subunit protein bS21
59	1, 2, 3, B, C...	MAGNESIUM ION	non-polymer		24.3	192	Chemie (MG)
60	6	KIRROMYCIN	non-polymer		796.9	1	Chemie (KIR)
61	6	GUANOSINE-5'-DIPHOSPHATE	non-polymer		443.2	1	Chemie (GDP)
62	f	ZINC ION	non-polymer		65.4	1	Chemie (ZN)

Sequence modifications

j: 1 - 167 (UniProt: P0A7W1)

PDB	External Database	Details
Lys 161	Val 161	conflict

Contents of the asymmetric unit

Polymers	Number of chains	58
	Total formula weight	2340729.7
Non-Polymers*	Number of molecules	195
	Total formula weight	5972.1
All*	Total formula weight	2346701.8

*Water molecules are not included.