7A18

50S Deinococcus radiodurans ribosome bounded with mycinamicin IV

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	X	RNA (2699-MER)	polymer	2699	875102.8	1		Deinococcus radiodurans R1
2	Y	RNA (122-MER)	polymer	122	39276.5	1	GenBank (11612676)	Deinococcus radiodurans R1
3	A	50S ribosomal protein L2	polymer	271	29533.0	1	UniProt (Q9RXJ9) Pfam (PF00181) Pfam (PF03947) In PDB	Deinococcus radiodurans R1
4	B	50S ribosomal protein L3	polymer	206	22033.6	1	UniProt (Q9RXK2) Pfam (PF00297) In PDB	Deinococcus radiodurans R1
5	C	50S ribosomal protein L4	polymer	195	21147.0	1	UniProt (Q9RXK1) Pfam (PF00573) In PDB	Deinococcus radiodurans R1
6	D	50S ribosomal protein L5	polymer	176	19834.2	1	UniProt (Q9RXJ0) Pfam (PF00281) Pfam (PF00673) In PDB	Deinococcus radiodurans R1
7	E	50S ribosomal protein L6	polymer	171	18266.0	1	UniProt (Q9RSL3) Pfam (PF00347) In PDB	Deinococcus radiodurans R1
8	G	50S ribosomal protein L13	polymer	142	15837.3	1	UniProt (Q9RXY1) Pfam (PF00572) In PDB	Deinococcus radiodurans R1
9	H	50S ribosomal protein L14	polymer	134	14256.5	1	UniProt (Q9RXJ2) Pfam (PF00238) In PDB	Deinococcus radiodurans R1
10	I	50S ribosomal protein L15	polymer	137	14798.9	1	UniProt (Q9RSK9) Pfam (PF00828) In PDB	Deinococcus radiodurans R1
11	J	50S ribosomal protein L16	polymer	134	15343.0	1	UniProt (Q9RXJ5) Pfam (PF00252) In PDB	Deinococcus radiodurans R1
12	K	50S ribosomal protein L17	polymer	115	12826.9	1	UniProt (Q9RSJ5) Pfam (PF01196) In PDB	Deinococcus radiodurans R1
13	L	50S ribosomal protein L18	polymer	104	11098.7	1	UniProt (Q9RSL2) Pfam (PF00861) In PDB	Deinococcus radiodurans R1
14	M	50S ribosomal protein L19	polymer	118	13446.5	1	UniProt (Q9RWB4) Pfam (PF01245) In PDB	Deinococcus radiodurans R1
15	N	50S ribosomal protein L20	polymer	117	13860.1	1	UniProt (Q9RSW7) Pfam (PF00453) In PDB	Deinococcus radiodurans R1
16	O	50S ribosomal protein L21	polymer	98	10888.5	1	UniProt (Q9RY64) Pfam (PF00829) In PDB	Deinococcus radiodurans R1
17	P	50S ribosomal protein L22	polymer	129	14661.3	1	UniProt (Q9RXJ7) Pfam (PF00237) In PDB	Deinococcus radiodurans R1
18	Q	50S ribosomal protein L23	polymer	93	10336.9	1	UniProt (Q9RXK0) Pfam (PF00276) In PDB	Deinococcus radiodurans R1
19	R	50S ribosomal protein L24	polymer	110	11770.7	1	UniProt (Q9RXJ1) Pfam (PF00467) Pfam (PF17136) In PDB	Deinococcus radiodurans R1
20	S	50S ribosomal protein L25	polymer	175	19184.0	1	UniProt (Q9RX88) Pfam (PF01386) Pfam (PF14693) In PDB	Deinococcus radiodurans R1	General stress protein CTC
21	T	50S ribosomal protein L27	polymer	72	7707.9	1	UniProt (Q9RY65) Pfam (PF01016) In PDB	Deinococcus radiodurans R1
22	U	50S ribosomal protein L28	polymer	74	8148.6	1	UniProt (Q9RRG8) Pfam (PF00830) In PDB	Deinococcus radiodurans R1
23	V	50S ribosomal protein L29	polymer	54	6257.2	1	UniProt (Q9RXJ4) Pfam (PF00831) In PDB	Deinococcus radiodurans R1
24	W	50S ribosomal protein L30	polymer	55	6079.2	1	UniProt (Q9RSL0) Pfam (PF00327) In PDB	Deinococcus radiodurans R1
25	Z	50S ribosomal protein L32	polymer	57	6508.6	1	UniProt (P49228) Pfam (PF01783) In PDB	Deinococcus radiodurans R1
26	1	50S ribosomal protein L33	polymer	49	5771.8	1	UniProt (Q9RSS4) Pfam (PF00471) In PDB	Deinococcus radiodurans R1
27	2	50S ribosomal protein L34	polymer	46	5497.5	1	UniProt (Q9RSH2) Pfam (PF00468) In PDB	Deinococcus radiodurans R1
28	3	50S ribosomal protein L35	polymer	63	7130.7	1	UniProt (Q9RSW6) Pfam (PF01632) In PDB	Deinococcus radiodurans R1
29	X	MYCINAMICIN IV	non-polymer		695.9	1	Chemie (MIV)
30	X, 3, Y, A, I...	MAGNESIUM ION	non-polymer		24.3	277	Chemie (MG)
31	X, V	SPERMIDINE	non-polymer		145.2	7	Chemie (SPD)

Sequence modifications

O: 1 - 98 (UniProt: Q9RY64)

PDB	External Database	Details
Ala 12	Tyr 12	conflict

Contents of the asymmetric unit

Polymers	Number of chains	28
	Total formula weight	1256603.9
Non-Polymers*	Number of molecules	285
	Total formula weight	8445.1
All*	Total formula weight	1265049.0

*Water molecules are not included.