7A01
The Halastavi arva virus intergenic region IRES promotes translation by the simplest possible initiation mechanism
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (E1) | INTERNAL RIBOSOME ENTRY SITE | polymer | 153 | 48550.5 | 1 | GenBank (JN000306.1) | Halastavi arva RNA virus | |
| 2 | B (e2) | 28S RIBOSOMAL RNA | polymer | 3825 | 1239030.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 3 | C (h2) | 5.8S RIBOSOMAL RNA | polymer | 156 | 50143.6 | 1 | GenBank (4CXE_3) | Oryctolagus cuniculus | |
| 4 | D (d2) | 5S RIBOSOMAL RNA | polymer | 120 | 38691.9 | 1 | GenBank (4CXE_4) | Oryctolagus cuniculus | |
| 5 | E (p2) | Uncharacterized protein | polymer | 69 | 8092.7 | 1 | UniProt (G1U001) Pfam (PF01781) | Oryctolagus cuniculus (Rabbit) | |
| 6 | F (k2) | eL14 | polymer | 131 | 13972.4 | 1 | UniProt (G1T6D1) Pfam (PF00238) | Oryctolagus cuniculus (Rabbit) | |
| 7 | G (l2) | Ribosomal protein L24 | polymer | 63 | 7512.8 | 1 | UniProt (G1SE28) Pfam (PF01246) | Oryctolagus cuniculus (Rabbit) | |
| 8 | H (m2) | Uncharacterized protein | polymer | 119 | 13856.4 | 1 | UniProt (G1SE76) Pfam (PF03939) Pfam (PF00276) | Oryctolagus cuniculus (Rabbit) | |
| 9 | I (o2) | Ribosomal protein L26 | polymer | 134 | 15891.8 | 1 | UniProt (G1SQH0) Pfam (PF16906) Pfam (PF00467) | Oryctolagus cuniculus (Rabbit) | |
| 10 | J (q2) | uL15 | polymer | 147 | 16489.4 | 1 | UniProt (G1SNY0) Pfam (PF00828) | Oryctolagus cuniculus (Rabbit) | |
| 11 | K (r2) | 60S ribosomal protein L29 | polymer | 75 | 8706.3 | 1 | UniProt (G1TN82) Pfam (PF01779) UniProt (by SIFTS) (G1SGR6) | Oryctolagus cuniculus (Rabbit) | |
| 12 | L (t2) | uL4 | polymer | 362 | 41101.4 | 1 | UniProt (G1SVW5) Pfam (PF00573) Pfam (PF14374) | Oryctolagus cuniculus (Rabbit) | |
| 13 | M (u2) | eL31 | polymer | 107 | 12635.7 | 1 | UniProt (G1SHG0) Pfam (PF01198) | Oryctolagus cuniculus (Rabbit) | |
| 14 | N (v2) | eL32 | polymer | 128 | 15022.0 | 1 | UniProt (G1TUN8) Pfam (PF01655) | Oryctolagus cuniculus (Rabbit) | |
| 15 | O (w2) | 60S RIBOSOMAL PROTEIN UL13 | polymer | 199 | 23144.9 | 1 | UniProt (G5B8P1) Pfam (PF00572) | Oryctolagus cuniculus | |
| 16 | P (x2) | eL33 | polymer | 109 | 12449.6 | 1 | UniProt (G1SF08) Pfam (PF01247) | Oryctolagus cuniculus (Rabbit) | |
| 17 | Q (y2) | eL34 | polymer | 114 | 12994.6 | 1 | UniProt (G1U945) Pfam (PF01199) UniProt (by SIFTS) (G1TXG5) | Oryctolagus cuniculus (Rabbit) | |
| 18 | R (92) | Uncharacterized protein | polymer | 244 | 26570.1 | 1 | UniProt (G1TT27) Pfam (PF00181) Pfam (PF03947) | Oryctolagus cuniculus (Rabbit) | |
| 19 | S (A2) | uL29 | polymer | 122 | 14435.4 | 1 | UniProt (G1SIT5) Pfam (PF00831) | Oryctolagus cuniculus (Rabbit) | |
| 20 | T (B2) | 60S ribosomal protein L36 | polymer | 102 | 11888.4 | 1 | UniProt (G1TTQ5) Pfam (PF01158) | Oryctolagus cuniculus (Rabbit) | |
| 21 | U (C2) | Ribosomal protein L37 | polymer | 86 | 10090.9 | 1 | UniProt (U3KPD5) Pfam (PF01907) | Oryctolagus cuniculus (Rabbit) | |
| 22 | V (D2) | ribosomal protein eL39 | polymer | 50 | 6295.6 | 1 | UniProt (G1SYU7) Pfam (PF00832) | Oryctolagus cuniculus (Rabbit) | |
| 23 | W (E2) | 60S RIBOSOMAL PROTEIN EL40 | polymer | 52 | 6199.6 | 1 | UniProt (P63048) Pfam (PF01020) | Oryctolagus cuniculus | |
| 24 | X (F2) | eL42 | polymer | 104 | 12198.6 | 1 | UniProt (G1T040) Pfam (PF00935) | Oryctolagus cuniculus (Rabbit) | |
| 25 | Y (G2) | 60S ribosomal protein L5 | polymer | 292 | 34006.3 | 1 | UniProt (G1SYJ6) UniProt (by SIFTS) (P19949) | Oryctolagus cuniculus (Rabbit) | |
| 26 | Z (H2) | uL22 | polymer | 153 | 17758.7 | 1 | UniProt (G1TVT6) Pfam (PF00237) UniProt (by SIFTS) (G1SCJ6) | Oryctolagus cuniculus (Rabbit) | |
| 27 | AA (I2) | ribosomal protein eL43 | polymer | 91 | 10168.2 | 1 | UniProt (G1SY53) Pfam (PF01780) | Oryctolagus cuniculus (Rabbit) | |
| 28 | BA (J2) | Uncharacterized protein | polymer | 125 | 14319.8 | 1 | UniProt (G1U7L1) Pfam (PF01778) | Oryctolagus cuniculus (Rabbit) | |
| 29 | CA (K2) | 60S acidic ribosomal protein P0 | polymer | 198 | 21747.3 | 1 | UniProt (G1SPK4) Pfam (PF00466) Pfam (PF17777) | Oryctolagus cuniculus (Rabbit) | |
| 30 | DA (L2) | Ribosomal protein L10 (Predicted) | polymer | 102 | 11944.1 | 1 | UniProt (B7NZQ2) Pfam (PF00252) | Oryctolagus cuniculus (Rabbit) | |
| 31 | EA (M2) | Uncharacterized protein | polymer | 163 | 17689.5 | 1 | UniProt (G1SMR7) Pfam (PF03946) Pfam (PF00298) | Oryctolagus cuniculus (Rabbit) | |
| 32 | FA (R2) | Ribosomal_L6e_N domain-containing protein | polymer | 35 | 4063.8 | 1 | UniProt (G1U1N5) Pfam (PF03868) | Oryctolagus cuniculus (Rabbit) | |
| 33 | GA (S2) | 60S RIBOSOMAL PROTEIN EL18 | polymer | 187 | 21556.5 | 1 | UniProt (Q07020) Pfam (PF17135) | Oryctolagus cuniculus | |
| 34 | HA (T2) | 60S ribosomal protein L6 | polymer | 201 | 22881.1 | 1 | UniProt (G1SKF7) Pfam (PF01159) | Oryctolagus cuniculus (Rabbit) | |
| 35 | IA (U2) | uL30 | polymer | 225 | 26658.8 | 1 | UniProt (G1SV32) Pfam (PF08079) Pfam (PF00327) | Oryctolagus cuniculus (Rabbit) | |
| 36 | JA (V2) | 60S RIBOSOMAL PROTEIN EL8 | polymer | 241 | 27452.5 | 1 | UniProt (P62424) Pfam (PF01248) | Oryctolagus cuniculus | |
| 37 | KA (W2) | Uncharacterized protein | polymer | 190 | 21627.2 | 1 | UniProt (G1SWI6) Pfam (PF00347) | Oryctolagus cuniculus (Rabbit) | |
| 38 | LA (X2) | Ribosomal protein L10 (Predicted) | polymer | 102 | 11682.7 | 1 | UniProt (B7NZQ2) Pfam (PF00252) | Oryctolagus cuniculus (Rabbit) | |
| 39 | MA (Y2) | Ribosomal protein L11 | polymer | 169 | 19270.3 | 1 | UniProt (G1TUB8) Pfam (PF00281) Pfam (PF00673) | Oryctolagus cuniculus (Rabbit) | |
| 40 | NA (02) | Ribosomal protein L14 | polymer | 138 | 16217.4 | 1 | UniProt (U3KNW6) Pfam (PF01929) UniProt (by SIFTS) (G1SZ12) | Oryctolagus cuniculus (Rabbit) | |
| 41 | OA (12) | Ribosomal protein L15 | polymer | 203 | 24076.1 | 1 | UniProt (G1T0C1) Pfam (PF00827) | Oryctolagus cuniculus (Rabbit) | |
| 42 | PA (22) | 60S ribosomal protein L27 | polymer | 135 | 15704.6 | 1 | UniProt (G1TXF6) Pfam (PF00467) Pfam (PF01777) | Oryctolagus cuniculus (Rabbit) | |
| 43 | QA (32) | 60S RIBOSOMAL PROTEIN EL19 | polymer | 180 | 21613.0 | 1 | UniProt (Q3T0W9) Pfam (PF01280) | Oryctolagus cuniculus | |
| 44 | RA (42) | Ribosomal protein | polymer | 217 | 24879.4 | 1 | UniProt (G1SKZ8) Pfam (PF00687) | Oryctolagus cuniculus (Rabbit) | |
| 45 | SA (52) | uL3 | polymer | 394 | 45119.8 | 1 | UniProt (G1TL06) Pfam (PF00297) | Oryctolagus cuniculus (Rabbit) | |
| 46 | TA (62) | 60S RIBOSOMAL PROTEIN EL20 | polymer | 175 | 20677.3 | 1 | UniProt (Q3T003) Pfam (PF01775) | Oryctolagus cuniculus | |
| 47 | UA (72) | eL21 | polymer | 159 | 18478.8 | 1 | UniProt (G1SHQ2) Pfam (PF01157) | Oryctolagus cuniculus (Rabbit) | |
| 48 | VA (82) | Ribosomal protein L22 | polymer | 99 | 11481.2 | 1 | UniProt (G1TSG1) Pfam (PF01776) | Oryctolagus cuniculus (Rabbit) | |
| 49 | WA (K3) | 18S RIBOSOMAL RNA | polymer | 1801 | 580908.9 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 50 | XA (s3) | 40S RIBOSOMAL PROTEIN ES30 | polymer | 43 | 5011.0 | 1 | UniProt (P62866) Pfam (PF04758) | Oryctolagus cuniculus | |
| 51 | YA (13) | Ribosomal protein L30 | polymer | 94 | 10498.3 | 1 | UniProt (G1TDL2) Pfam (PF01248) | Oryctolagus cuniculus (Rabbit) | |
| 52 | ZA (Q3) | 40S ribosomal protein S27a | polymer | 188 | 21431.7 | 1 | UniProt (G1SK22) Pfam (PF00240) Pfam (PF01599) | Oryctolagus cuniculus (Rabbit) | Ubiquitin carboxyl extension protein 80,Ubiquitin-40S ribosomal protein S27a |
| 53 | AB (G3) | Ribosomal protein S11 | polymer | 153 | 17786.0 | 1 | UniProt (G1TRM4) Pfam (PF16205) Pfam (PF00366) | Oryctolagus cuniculus (Rabbit) | |
| 54 | BB (G5) | ribosomal protein uS13 | polymer | 137 | 16170.8 | 1 | UniProt (G1TPG3) Pfam (PF00416) | Oryctolagus cuniculus (Rabbit) | |
| 55 | CB (a3) | ribosomal protein RACK1 | polymer | 313 | 34669.1 | 1 | UniProt (G1SJB4) Pfam (PF00400) | Oryctolagus cuniculus (Rabbit) | |
| 56 | DB (a5) | Uncharacterized protein | polymer | 136 | 14544.7 | 1 | UniProt (G1T1F0) Pfam (PF00411) | Oryctolagus cuniculus (Rabbit) | |
| 57 | EB (A3) | ribosomal protein uS19 | polymer | 127 | 15151.9 | 1 | UniProt (G1U0Q2) Pfam (PF00203) | Oryctolagus cuniculus (Rabbit) | |
| 58 | FB (T3) | Ribosomal protein S23 | polymer | 141 | 15626.4 | 1 | UniProt (G1SZ47) Pfam (PF00164) | Oryctolagus cuniculus (Rabbit) | |
| 59 | GB (U3) | 40S_SA_C domain-containing protein | polymer | 208 | 23390.8 | 1 | UniProt (G1TJH8) Pfam (PF00318) | Oryctolagus cuniculus (Rabbit) | |
| 60 | HB (V3) | 40S ribosomal protein S3a | polymer | 213 | 24759.1 | 1 | UniProt (G1SS70) Pfam (PF01015) | Oryctolagus cuniculus (Rabbit) | |
| 61 | IB (W3) | S5 DRBM domain-containing protein | polymer | 218 | 24091.5 | 1 | Oryctolagus cuniculus (Rabbit) | ||
| 62 | JB (X3) | 60s ribosomal protein l41 | polymer | 23 | 3213.1 | 1 | UniProt (A0A087WNH4) Pfam (PF05162) | Oryctolagus cuniculus (Rabbit) | |
| 63 | KB (Y3) | Ribosomal protein S3 | polymer | 227 | 25158.5 | 1 | UniProt (G1TNM3) Pfam (PF07650) Pfam (PF00189) | Oryctolagus cuniculus (Rabbit) | |
| 64 | LB (j3) | 40S ribosomal protein S4,40S ribosomal protein S4 | polymer | 262 | 29527.7 | 1 | UniProt (G1TK17) Pfam (PF08071) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Oryctolagus cuniculus (Rabbit) | |
| 65 | MB (J5) | Ribosomal protein S15a | polymer | 129 | 14734.4 | 1 | UniProt (G1TG89) Pfam (PF00410) | Oryctolagus cuniculus (Rabbit) | |
| 66 | NB (N3) | Ribosomal protein S5 | polymer | 191 | 21525.9 | 1 | UniProt (U3KMN4) Pfam (PF00177) | Oryctolagus cuniculus (Rabbit) | |
| 67 | OB (b3) | 40S ribosomal protein S6 | polymer | 237 | 27471.5 | 1 | UniProt (G1TM55) Pfam (PF01092) | Oryctolagus cuniculus (Rabbit) | |
| 68 | PB (B3) | Uncharacterized protein | polymer | 141 | 15975.8 | 1 | UniProt (G1SGX4) Pfam (PF00380) | Oryctolagus cuniculus (Rabbit) | |
| 69 | QB (f3) | ribosomal protein eS28 | polymer | 64 | 7263.4 | 1 | UniProt (G1TIB4) Pfam (PF01200) | Oryctolagus cuniculus (Rabbit) | |
| 70 | RB (F3) | ribosomal protein uS15 | polymer | 150 | 17128.2 | 1 | UniProt (G1SP51) Pfam (PF08069) Pfam (PF00312) | Oryctolagus cuniculus (Rabbit) | |
| 71 | SB (c3) | 40S ribosomal protein S8 | polymer | 206 | 24003.0 | 1 | UniProt (G1TJW1) Pfam (PF01201) | Oryctolagus cuniculus (Rabbit) | |
| 72 | TB (C3) | Uncharacterized protein | polymer | 129 | 14969.4 | 1 | UniProt (G1TU13) Pfam (PF00833) | Oryctolagus cuniculus (Rabbit) | |
| 73 | UB (d3) | Ribosomal protein S9 (Predicted) | polymer | 185 | 21649.6 | 1 | UniProt (B7NZS8) Pfam (PF00163) Pfam (PF01479) | Oryctolagus cuniculus (Rabbit) | |
| 74 | VB (D3) | 40S RIBOSOMAL PROTEIN ES21 | polymer | 83 | 9043.3 | 1 | UniProt (A0A1Z5KTU7) Pfam (PF01249) | Oryctolagus cuniculus | |
| 75 | WB (e3) | 40S ribosomal protein S12 | polymer | 124 | 13766.1 | 1 | UniProt (G1SFR8) Pfam (PF01248) | Oryctolagus cuniculus (Rabbit) | |
| 76 | XB (E3) | S10_plectin domain-containing protein | polymer | 98 | 11774.0 | 1 | UniProt (G1T168) Pfam (PF03501) | Oryctolagus cuniculus (Rabbit) | |
| 77 | YB (H3) | ribosomal protein uS14 | polymer | 53 | 6364.4 | 1 | UniProt (G1U7M4) Pfam (PF00253) | Oryctolagus cuniculus (Rabbit) | |
| 78 | ZB (H5) | Uncharacterized protein | polymer | 141 | 15812.3 | 1 | UniProt (G1TN62) Pfam (PF01090) | Oryctolagus cuniculus (Rabbit) | |
| 79 | AC (P3) | 40S RIBOSOMAL PROTEIN ES7 | polymer | 189 | 21603.2 | 1 | UniProt (A6H769) Pfam (PF01251) | Oryctolagus cuniculus | |
| 80 | BC (I3) | Ribosomal_S10 domain-containing protein | polymer | 104 | 11765.9 | 1 | UniProt (A0A5F9CX53) Pfam (PF00338) | Oryctolagus cuniculus (Rabbit) | |
| 81 | CC (I5) | 40S ribosomal protein S24 | polymer | 126 | 14604.3 | 1 | UniProt (A0A5F9CBF4) Pfam (PF01282) | Oryctolagus cuniculus (Rabbit) | |
| 82 | DC (L3) | 40S ribosomal protein S27 | polymer | 83 | 9349.0 | 1 | UniProt (G1TZ76) Pfam (PF01667) | Oryctolagus cuniculus (Rabbit) | |
| 83 | EC (M3) | ribosomal protein eS25 | polymer | 75 | 8526.1 | 1 | UniProt (G1TDB3) Pfam (PF03297) | Oryctolagus cuniculus (Rabbit) | |
| 84 | FC (O3) | 40S RIBOSOMAL PROTEIN ES26 | polymer | 98 | 11184.2 | 1 | UniProt (Q56JV1) Pfam (PF01283) | Oryctolagus cuniculus | |
| 85 | GC (a7) | 60S ribosomal protein L13 | polymer | 210 | 24200.5 | 1 | UniProt (G1TPV0) | Oryctolagus cuniculus (Rabbit) | |
| 86 | HC, IC, JC, KC, LC... (C2, E2, F2, I2, H3...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) |
Sequence modifications
w2: 5 - 203 (UniProt: G5B8P1)
T2: 91 - 291 (UniProt: G1SKF7)
82: 17 - 115 (UniProt: G1TSG1)
j3: 2 - 130 (UniProt: G1TK17)
j3: 131 - 263 (UniProt: G1TK17)
c3: 2 - 207 (UniProt: G1TJW1)
D3: 1 - 83 (UniProt: A0A1Z5KTU7)
a7: 2 - 211 (UniProt: G1TPV0)
| PDB | External Database | Details |
|---|---|---|
| Leu 174 | Ile 170 | variant |
| Asp 194 | Glu 190 | variant |
| PDB | External Database | Details |
|---|---|---|
| Gln 224 | Lys 224 | variant |
| Lys 231 | Gln 231 | variant |
| PDB | External Database | Details |
|---|---|---|
| Gly 32 | Arg 32 | variant |
| Ala 36 | Glu 36 | variant |
| Phe 39 | Ser 39 | variant |
| Gly 54 | Arg 54 | variant |
| Val 60 | Ala 60 | variant |
| Arg 97 | His 97 | variant |
j3: 131 - 263 (UniProt: G1TK17)
c3: 2 - 207 (UniProt: G1TJW1)
| PDB | External Database | Details |
|---|---|---|
| Arg 47 | Gly 47 | variant |
| PDB | External Database | Details |
|---|---|---|
| Ser 3 | Asn 3 | variant |
| Asn 4 | Asp 4 | variant |
| Pro 33 | Gln 33 | variant |
| Ser 50 | Phe 50 | variant |
| His 76 | Asp 76 | variant |
| PDB | External Database | Details |
|---|---|---|
| Ala 47 | - | insertion |
| Pro 48 | - | insertion |
| Arg 49 | - | insertion |
| Pro 50 | - | insertion |
| Ala 51 | - | insertion |
| Ala 52 | - | insertion |
| Gly 53 | - | insertion |
| Pro 54 | - | insertion |
| Ile 55 | - | insertion |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 85 |
| Total formula weight | 3331693.9 | |
| Non-Polymers* | Number of molecules | 6 |
| Total formula weight | 392.5 | |
| All* | Total formula weight | 3332086.4 |
