6ZZX
Structure of low-light grown Chlorella ohadii Photosystem I
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A | Photosystem I P700 chlorophyll a apoprotein A1 | polymer | 741 | 82125.9 | 1 | UniProt (W8SY74) Pfam (PF00223) In PDB | Chlorella ohadii (Freshwater green alga) | PSI-A,PsaA |
2 | B | Photosystem I P700 chlorophyll a apoprotein A2 | polymer | 731 | 81544.6 | 1 | UniProt (W8SUA3) Pfam (PF00223) In PDB | Chlorella ohadii (Freshwater green alga) | PSI-B,PsaB |
3 | C | Photosystem I iron-sulfur center | polymer | 80 | 8723.0 | 1 | UniProt (W8SKM2) Pfam (PF12838) In PDB | Chlorella ohadii (Freshwater green alga) | 9 kDa polypeptide,PSI-C,Photosystem I subunit VII,PsaC |
4 | D | Photosystem I reaction center subunit chloroplastic | polymer | 143 | 15958.2 | 1 | UniProt (A0A2P6TKF8) Pfam (PF02531) In PDB | Chlorella ohadii (Freshwater green alga) | |
5 | E | Photosystem I reaction center subunit IV | polymer | 64 | 7194.1 | 1 | UniProt (A0A2P6U4S6) Pfam (PF02427) In PDB | Chlorella ohadii (Freshwater green alga) | |
6 | F | PSI-F | polymer | 165 | 18069.9 | 1 | UniProt (A0A2P6TPV8) Pfam (PF02507) In PDB | Chlorella ohadii (Freshwater green alga) | |
7 | G | Photosystem I reaction center subunit chloroplastic | polymer | 99 | 10326.9 | 1 | UniProt (A0A2P6TZI8) Pfam (PF01241) In PDB | Chlorella ohadii (Freshwater green alga) | |
8 | H | Photosystem I reaction center subunit VI-chloroplastic-like | polymer | 94 | 10319.5 | 1 | UniProt (A0A2P6TPU7) Pfam (PF03244) In PDB | Chlorella ohadii (Freshwater green alga) | |
9 | J | Photosystem I reaction center subunit IX | polymer | 41 | 4475.3 | 1 | UniProt (W8SUD1) Pfam (PF01701) In PDB | Chlorella ohadii (Freshwater green alga) | PSI-J |
10 | K | Photosystem I reaction center subunit chloroplastic | polymer | 86 | 8725.1 | 1 | UniProt (A0A2P6U0J1) Pfam (PF01241) In PDB | Chlorella ohadii (Freshwater green alga) | |
11 | L | Photosystem I reaction center subunit XI | polymer | 157 | 16501.0 | 1 | UniProt (A0A2P6TC44) Pfam (PF02605) In PDB | Chlorella ohadii (Freshwater green alga) | |
12 | M | Photosystem I reaction center subunit XII | polymer | 31 | 3376.1 | 1 | UniProt (W8SU98) Pfam (PF07465) In PDB | Chlorella ohadii (Freshwater green alga) | PSI-M |
13 | I | Photosystem I reaction center subunit VIII | polymer | 35 | 3856.7 | 1 | UniProt (W8SIP9) Pfam (PF00796) In PDB | Chlorella ohadii (Freshwater green alga) | PSI-I |
14 | O | Photosystem I subunit O | polymer | 87 | 9548.0 | 1 | UniProt (A0A2P6THB2) Pfam (PF22832) In PDB | Chlorella ohadii (Freshwater green alga) | |
15 | 1, a | Chlorophyll a-b binding protein, chloroplastic | polymer | 192 | 19933.6 | 2 | UniProt (A0A2P6TT36) Pfam (PF00504) In PDB | Chlorella ohadii (Freshwater green alga) | |
16 | 3 | Glutathione reductase | polymer | 241 | 26163.9 | 1 | UniProt (A0A2P6TMT4) Pfam (PF00504) In PDB | Chlorella ohadii (Freshwater green alga) | |
17 | 4 | Lhca4 | polymer | 207 | 23011.0 | 1 | Chlorella ohadii (Freshwater green alga) | ||
18 | 5 | Chlorophyll a-b binding protein, chloroplastic | polymer | 229 | 25371.0 | 1 | UniProt (A0A2P6U4K1) Pfam (PF00504) In PDB | Chlorella ohadii (Freshwater green alga) | |
19 | 6 | Chlorophyll a-b binding protein, chloroplastic | polymer | 231 | 25316.2 | 1 | UniProt (A0A2P6TPR7) Pfam (PF00504) In PDB | Chlorella ohadii (Freshwater green alga) | |
20 | 7 | Lhca7 | polymer | 221 | 24016.2 | 1 | Chlorella ohadii (Freshwater green alga) | ||
21 | 8 | Chlorophyll a-b binding protein, chloroplastic | polymer | 219 | 23612.7 | 1 | UniProt (A0A2P6TZ50) Pfam (PF00504) In PDB | Chlorella ohadii (Freshwater green alga) | |
22 | 2 | Chlorophyll a-b binding protein, chloroplastic | polymer | 215 | 23618.0 | 1 | UniProt (A0A2P6TMX4) Pfam (PF00504) In PDB | Chlorella ohadii (Freshwater green alga) | |
23 | 9 | Chlorophyll a-b binding protein, chloroplastic | polymer | 183 | 19911.7 | 1 | UniProt (A0A2P6TMI2) Pfam (PF00504) In PDB | Chlorella ohadii (Freshwater green alga) | |
24 | A | CHLOROPHYLL A ISOMER | non-polymer | 893.5 | 1 | Chemie (CL0) | |||
25 | A, B, H, O, 4... | CHLOROPHYLL A | non-polymer | 893.5 | 208 | Chemie (CLA) | |||
26 | 8, 9, 3, 5, 6... | CHLOROPHYLL B | non-polymer | 907.5 | 47 | Chemie (CHL) | |||
27 | A, B | PHYLLOQUINONE | non-polymer | 450.7 | 2 | Chemie (PQN) | |||
28 | C, A | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 3 | Chemie (SF4) | |||
29 | B, 3, H, O, J... | BETA-CAROTENE | non-polymer | 536.9 | 32 | Chemie (BCR) | |||
30 | B, A, 9, 4, 7... | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 24 | Chemie (LHG) | |||
31 | A | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 1 | Chemie (LMG) | |||
32 | H, 7, G, A, I | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 5 | Chemie (SQD) | |||
33 | J, B, 9, 5, 3... | PHOSPHATIDYLETHANOLAMINE | non-polymer | 734.0 | 11 | Chemie (PTY) | |||
34 | A | 1,2-DIACYL-GLYCEROL-3-SN-PHOSPHATE | non-polymer | 705.0 | 1 | Chemie (3PH) | |||
35 | A, B, 2, 1 | DODECYL-BETA-D-MALTOSIDE | non-polymer | 510.6 | 4 | Chemie (LMT) | |||
36 | B, 8, 7 | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 4 | Chemie (DGD) | |||
37 | B, K, 6 | 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE | non-polymer | 787.1 | 4 | Chemie (PCW) | |||
38 | F | (2S)-3-{[(R)-(2-aminoethoxy)(hydroxy)phosphoryl]oxy}-2-hydroxypropyl hexadecanoate | non-polymer | 453.6 | 1 | Chemie (LPX) | |||
39 | F | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 1 | Chemie (NEX) | |||
40 | 3, J | (3R)-beta,beta-caroten-3-ol | non-polymer | 552.9 | 2 | Chemie (RRX) | |||
41 | J, 9, 4, 6 | SPHINGOSINE | non-polymer | 299.5 | 4 | Chemie (SPH) | |||
42 | M | beta,beta-caroten-4-one | non-polymer | 550.9 | 1 | Chemie (ECH) | |||
43 | a, 1, 5, 9, 4... | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 21 | Chemie (LUT) | |||
44 | 1, 7 | ASTAXANTHIN | non-polymer | 596.8 | 2 | Chemie (AXT) | |||
45 | 8, a, 1 | OLEIC ACID | non-polymer | 282.5 | 4 | Chemie (OLA) | |||
46 | a | (3~{E},5~{E},7~{E})-6-methyl-8-[(6~{R})-2,2,6-trimethylcyclohexyl]octa-3,5,7-trien-2-one | non-polymer | 260.4 | 1 | Chemie (QTB) | |||
47 | 4, 6, 5, 8, a | PALMITIC ACID | non-polymer | 256.4 | 7 | Chemie (PLM) | |||
48 | 8, 5, 2, 3 | DIACYL GLYCEROL | non-polymer | 625.0 | 4 | Chemie (DGA) | |||
49 | 6 | benzene-1,3,5-triol | non-polymer | 126.1 | 1 | Chemie (13X) | |||
50 | 9, 7, 2 | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 4 | Chemie (XAT) | |||
51 | 7 | Tripalmitoylglycerol | non-polymer | 807.3 | 1 | Chemie (4RF) | |||
52 | 8 | O-[(R)-{[(2R)-2,3-bis(octadecanoyloxy)propyl]oxy}(hydroxy)phosphoryl]-L-serine | non-polymer | 792.1 | 1 | Chemie (P5S) | |||
53 | 8 | [2-((1-OXODODECANOXY-(2-HYDROXY-3-PROPANYL))-PHOSPHONATE-OXY)-ETHYL]-TRIMETHYLAMMONIUM | non-polymer | 440.5 | 1 | Chemie (LAP) | |||
54 | water | water | 18.0 | 99 | Chemie (HOH) |
Sequence modifications
A: 11 - 751 (UniProt: W8SY74)
B: null - 734 (UniProt: W8SUA3)
D: 188 - 330 (UniProt: A0A2P6TKF8)
E: 35 - 98 (UniProt: A0A2P6U4S6)
F: 318 - 482 (UniProt: A0A2P6TPV8)
G: 1228 - 1326 (UniProt: A0A2P6TZI8)
H: 34 - 127 (UniProt: A0A2P6TPU7)
K: 32 - 117 (UniProt: A0A2P6U0J1)
L: 295 - 451 (UniProt: A0A2P6TC44)
1, a: 32 - 223 (UniProt: A0A2P6TT36)
3: 247 - 487 (UniProt: A0A2P6TMT4)
5: 30 - 258 (UniProt: A0A2P6U4K1)
6: 35 - 265 (UniProt: A0A2P6TPR7)
8: 29 - 247 (UniProt: A0A2P6TZ50)
2: 30 - 244 (UniProt: A0A2P6TMX4)
PDB | External Database | Details |
---|---|---|
Ala 368 | Ser 368 | conflict |
Ile 437 | Met 437 | conflict |
PDB | External Database | Details |
---|---|---|
- | Thr 3 | deletion |
Leu 5 | - | insertion |
Ala 241 | Val 240 | conflict |
Ala 402 | Glu 401 | conflict |
Gln 403 | Ala 402 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 188 | Val 188 | conflict |
Ile 320 | Val 320 | conflict |
PDB | External Database | Details |
---|---|---|
Gln 44 | Thr 44 | conflict |
Leu 48 | Met 48 | conflict |
Val 96 | Glu 96 | conflict |
Ala 97 | Glu 97 | conflict |
Ala 98 | Val 98 | conflict |
PDB | External Database | Details |
---|---|---|
Leu 346 | Met 346 | conflict |
Asn 348 | Lys 348 | conflict |
Ala 351 | Glu 351 | conflict |
Asp 352 | Gly 352 | conflict |
Lys 360 | Gln 360 | conflict |
Ala 364 | Asp 364 | conflict |
Glu 367 | Asn 367 | conflict |
Ala 430 | Ser 430 | conflict |
Ala 431 | Ser 431 | conflict |
Thr 432 | Met 432 | conflict |
Ala 433 | Thr 433 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 1229 | Ser 1229 | conflict |
Leu 1272 | Met 1272 | conflict |
Ile 1285 | Val 1285 | conflict |
Ile 1313 | Leu 1313 | conflict |
Ser 1317 | His 1317 | conflict |
Gly 1320 | Gln 1320 | conflict |
Leu 1321 | Val 1321 | conflict |
Asn 1324 | Val 1324 | conflict |
PDB | External Database | Details |
---|---|---|
Ile 92 | Val 92 | conflict |
Gly 102 | Leu 102 | conflict |
Ala 105 | Ser 105 | conflict |
Ala 106 | Ser 106 | conflict |
Arg 109 | Ser 109 | conflict |
- | Ile 112 | deletion |
Val 113 | Lys 114 | conflict |
PDB | External Database | Details |
---|---|---|
Ala 74 | Glu 74 | conflict |
Leu 103 | Ile 103 | conflict |
Cys 105 | Val 105 | conflict |
Ile 107 | Val 107 | conflict |
Val 108 | Ile 108 | conflict |
Lys 112 | Arg 112 | conflict |
Ser 113 | Gly 113 | conflict |
PDB | External Database | Details |
---|---|---|
Tyr 350 | Phe 350 | conflict |
Asp 364 | Asn 364 | conflict |
- | Ala 389 | deletion |
Asp 421 | Glu 422 | conflict |
Leu 443 | Ile 444 | conflict |
PDB | External Database | Details |
---|---|---|
Ser 166 | Leu 166 | conflict |
Lys 167 | Glu 167 | conflict |
Thr 171 | Val 171 | conflict |
Thr 194 | Asn 194 | conflict |
Ala 196 | Gln 196 | conflict |
Ser 204 | Ala 204 | conflict |
Met 210 | Leu 210 | conflict |
PDB | External Database | Details |
---|---|---|
Cys 314 | Gly 314 | conflict |
Ile 329 | Val 329 | conflict |
Thr 339 | Ser 339 | conflict |
Lys 359 | Asn 359 | conflict |
Gly 405 | Ala 405 | conflict |
Glu 429 | Ala 429 | conflict |
Thr 484 | Arg 484 | conflict |
Ile 485 | Arg 485 | conflict |
Leu 486 | Arg 486 | conflict |
Lys 487 | Ala 487 | conflict |
PDB | External Database | Details |
---|---|---|
Lys 32 | Asp 32 | conflict |
Val 38 | Ala 38 | conflict |
Ala 40 | Ser 40 | conflict |
Gly 42 | Ala 42 | conflict |
Ser 113 | Gly 113 | conflict |
Ile 127 | Leu 127 | conflict |
Val 195 | Ile 195 | conflict |
PDB | External Database | Details |
---|---|---|
Cys 83 | Ala 83 | conflict |
Leu 94 | Met 94 | conflict |
Ile 196 | Val 196 | conflict |
Ala 201 | Gly 201 | conflict |
Gln 250 | Asn 250 | conflict |
PDB | External Database | Details |
---|---|---|
Glu 103 | Asp 103 | conflict |
PDB | External Database | Details |
---|---|---|
Asp 64 | Glu 64 | conflict |
Pro 97 | Asn 97 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 24 |
Total formula weight | 511632.2 | |
Non-Polymers* | Number of molecules | 403 |
Total formula weight | 315712.0 | |
All* | Total formula weight | 827344.2 |