6ZU9
Structure of a yeast ABCE1-bound 48S initiation complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (2) | 18S ribosomal RNA | polymer | 1800 | 579761.9 | 1 | GenBank (874346701) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | |
| 2 | B (P) | 40S ribosomal protein S0-A | polymer | 252 | 28051.3 | 1 | UniProt (P32905) Pfam (PF00318) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A |
| 3 | C (Q) | 40S ribosomal protein S1-A | polymer | 255 | 28798.5 | 1 | UniProt (P33442) Pfam (PF01015) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP10A,Small ribosomal subunit protein eS1-A |
| 4 | D (R) | 40S ribosomal protein S2 | polymer | 254 | 27490.8 | 1 | UniProt (P25443) Pfam (PF00333) Pfam (PF03719) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5 |
| 5 | E (S) | 40S ribosomal protein S4-A | polymer | 261 | 29469.3 | 1 | UniProt (P0CX35) Pfam (PF08071) Pfam (PF01479) Pfam (PF00900) Pfam (PF00467) Pfam (PF16121) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP5,S7,Small ribosomal subunit protein eS4-A,YS6 |
| 6 | F (T) | 40S ribosomal protein S6-A | polymer | 236 | 27054.5 | 1 | UniProt (P0CX37) Pfam (PF01092) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP9,S10,Small ribosomal subunit protein eS6-A,YS4 |
| 7 | G (U) | 40S ribosomal protein S7-A | polymer | 190 | 21658.2 | 1 | UniProt (P26786) Pfam (PF01251) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP30,RP40,Small ribosomal subunit protein eS7-A |
| 8 | H (V) | 40S ribosomal protein S8-A | polymer | 200 | 22537.8 | 1 | UniProt (P0CX39) Pfam (PF01201) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP19,S14,Small ribosomal subunit protein eS8-A,YS9 |
| 9 | I (W) | 40S ribosomal protein S9-A | polymer | 197 | 22487.9 | 1 | UniProt (O13516) Pfam (PF00163) Pfam (PF01479) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11 |
| 10 | J (X) | 40S ribosomal protein S11-A | polymer | 155 | 17668.8 | 1 | UniProt (P0CX47) Pfam (PF16205) Pfam (PF00366) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP41,S18,YS12 |
| 11 | K (Y) | 40S ribosomal protein S13 | polymer | 151 | 17059.9 | 1 | UniProt (P05756) Pfam (PF08069) Pfam (PF00312) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | S27a,Small ribosomal subunit protein uS15,YS15 |
| 12 | L (Z) | 40S ribosomal protein S14-A | polymer | 136 | 14431.5 | 1 | UniProt (P06367) Pfam (PF00411) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP59A,Small ribosomal subunit protein uS11-A |
| 13 | M (a) | 40S ribosomal protein S21-A | polymer | 87 | 9758.8 | 1 | UniProt (P0C0V8) Pfam (PF01249) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | S26,Small ribosomal subunit protein eS21-A,YS25 |
| 14 | N (b) | 40S ribosomal protein S22-A | polymer | 130 | 14650.1 | 1 | UniProt (P0C0W1) Pfam (PF00410) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22 |
| 15 | O (c) | 40S ribosomal protein S23-A | polymer | 145 | 16073.9 | 1 | UniProt (P0CX29) Pfam (PF00164) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP37,S28,Small ribosomal subunit protein uS12-A,YS14 |
| 16 | P (d) | 40S ribosomal protein S24-A | polymer | 135 | 15362.8 | 1 | UniProt (P0CX31) Pfam (PF01282) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP50,Small ribosomal subunit protein eS24-A |
| 17 | Q (e) | 40S ribosomal protein S26-A | polymer | 119 | 13538.9 | 1 | UniProt (P39938) Pfam (PF01283) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Small ribosomal subunit protein eS26-A |
| 18 | R (f) | 40S ribosomal protein S27-A | polymer | 82 | 8893.4 | 1 | UniProt (P35997) Pfam (PF01667) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP61,Small ribosomal subunit protein eS27-A,YS20 |
| 19 | S (g) | 40S ribosomal protein S30-A | polymer | 63 | 7137.5 | 1 | UniProt (P0CX33) Pfam (PF04758) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Small ribosomal subunit protein eS30-A |
| 20 | T (E) | 40S ribosomal protein S15 | polymer | 141 | 15830.6 | 1 | UniProt (Q01855) Pfam (PF00203) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RIG protein,RP52,S21,YS21 |
| 21 | U (B) | 40S ribosomal protein S3 | polymer | 240 | 26542.8 | 1 | UniProt (P05750) Pfam (PF07650) Pfam (PF00189) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP13,Small ribosomal subunit protein uS3,YS3 |
| 22 | V (C) | Rps5p | polymer | 225 | 25072.6 | 1 | UniProt (A0A1L4AA68) Pfam (PF00177) UniProt (by SIFTS) (P26783) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | |
| 23 | W (D) | 40S ribosomal protein S10-A | polymer | 105 | 12757.4 | 1 | UniProt (Q08745) Pfam (PF03501) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Small ribosomal subunit protein eS10-A |
| 24 | X (F) | 40S ribosomal protein S12 | polymer | 143 | 15488.6 | 1 | UniProt (P48589) Pfam (PF01248) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Small ribosomal subunit protein eS12 |
| 25 | Y (H) | 40S ribosomal protein S16-A | polymer | 143 | 15877.5 | 1 | UniProt (P0CX51) Pfam (PF00380) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP61R,Small ribosomal subunit protein uS9-A |
| 26 | Z (I) | 40S ribosomal protein S17-A | polymer | 136 | 15820.4 | 1 | UniProt (P02407) Pfam (PF00833) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP51A,Small ribosomal subunit protein eS17-A |
| 27 | AA (J) | 40S ribosomal protein S18-A | polymer | 146 | 17071.6 | 1 | UniProt (P0CX55) Pfam (PF00416) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Small ribosomal subunit protein uS13-A |
| 28 | BA (K) | 40S ribosomal protein S19-A | polymer | 144 | 15942.1 | 1 | UniProt (P07280) Pfam (PF01090) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A |
| 29 | CA (L) | 40S ribosomal protein S20 | polymer | 121 | 13929.0 | 1 | UniProt (P38701) Pfam (PF00338) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Small ribosomal subunit protein uS10 |
| 30 | DA (M) | 40S ribosomal protein S25-A | polymer | 108 | 12067.3 | 1 | UniProt (Q3E792) Pfam (PF03297) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | RP45,S31,Small ribosomal subunit protein eS25-A,YS23 |
| 31 | EA (N) | 40S ribosomal protein S29-A | polymer | 56 | 6675.7 | 1 | UniProt (P41057) Pfam (PF00253) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | S36,Small ribosomal subunit protein uS14-A,YS29 |
| 32 | FA (O) | Ubiquitin-40S ribosomal protein S31 | polymer | 152 | 17254.2 | 1 | UniProt (P05759) Pfam (PF00240) Pfam (PF01599) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | |
| 33 | GA (h) | Guanine nucleotide-binding protein subunit beta-like protein | polymer | 319 | 34841.2 | 1 | UniProt (P38011) Pfam (PF00400) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Receptor for activated C kinase,Receptor of activated protein kinase C 1,RACK1,Small ribosomal subunit protein RACK1 |
| 34 | HA (i) | 40S ribosomal protein S28-B | polymer | 67 | 7578.8 | 1 | UniProt (P0C0X0) Pfam (PF01200) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | S33,Small ribosomal subunit protein eS28-B,YS27 |
| 35 | IA (l) | Eukaryotic translation initiation factor 3 subunit I | polymer | 347 | 38803.4 | 1 | UniProt (P40217) Pfam (PF00400) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | eIF3i,Eukaryotic translation initiation factor 3 39 kDa subunit,eIF3 p39 |
| 36 | JA (r) | Eukaryotic translation initiation factor 3 subunit G | polymer | 135 | 15258.4 | 1 | UniProt (Q04067) Pfam (PF12353) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | eIF3g,Eukaryotic translation initiation factor 3 RNA-binding subunit,eIF-3 RNA-binding subunit,Translation initiation factor eIF3 p33 subunit,eIF3 p33 |
| 37 | KA (1) | tRNA | polymer | 75 | 24713.0 | 1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | ||
| 38 | LA (m) | Eukaryotic translation initiation factor 5 | polymer | 405 | 45338.0 | 1 | UniProt (P38431) Pfam (PF01873) Pfam (PF02020) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | eIF-5 |
| 39 | MA (o) | Eukaryotic translation initiation factor 3 subunit A | polymer | 964 | 110517.6 | 1 | UniProt (P38249) Pfam (PF22591) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | eIF3a,Eukaryotic translation initiation factor 3 110 kDa subunit homolog,eIF3 p110,Translation initiation factor eIF3,p110 subunit homolog |
| 40 | NA (p) | Eukaryotic translation initiation factor 3 subunit B | polymer | 763 | 88241.8 | 1 | UniProt (P06103) Pfam (PF00076) Pfam (PF08662) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | eIF3b,Cell cycle regulation and translation initiation protein,Eukaryotic translation initiation factor 3 90 kDa subunit,eIF3 p90,Translation initiation factor eIF3 p90 subunit |
| 41 | OA (q) | Eukaryotic translation initiation factor 3 subunit C | polymer | 812 | 93310.2 | 1 | UniProt (P32497) Pfam (PF05470) Pfam (PF01399) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | eIF3c,Eukaryotic translation initiation factor 3 93 kDa subunit,eIF3 p93,Nuclear transport protein NIP1,Translation initiation factor eIF3,p93 subunit |
| 42 | PA (3) | mRNA | polymer | 8 | 2534.6 | 1 | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) | ||
| 43 | QA (A) | Eukaryotic translation initiation factor 1A | polymer | 153 | 17462.2 | 1 | UniProt (P38912) Pfam (PF01176) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | eIF-1A,Eukaryotic translation initiation factor 4C,eIF-4C |
| 44 | RA (k) | Translation initiation factor RLI1 | polymer | 608 | 68433.2 | 1 | UniProt (Q03195) Pfam (PF04068) Pfam (PF00037) Pfam (PF00005) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | ATP-binding cassette sub-family E member RLI1,RNase L inhibitor |
| 45 | AB, SA, TA, YA (k, 2) | MAGNESIUM ION | non-polymer | 24.3 | 4 | Chemie (MG) | |||
| 46 | UA, VA, WA (N, O, m) | ZINC ION | non-polymer | 65.4 | 3 | Chemie (ZN) | |||
| 47 | XA (k) | ADENOSINE-5'-DIPHOSPHATE | non-polymer | 427.2 | 1 | Chemie (ADP) | |||
| 48 | ZA (k) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) | |||
| 49 | BB, CB (k) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 2 | Chemie (SF4) |
Sequence modifications
X: 2 - 156 (UniProt: P0CX47)
E: 2 - 142 (UniProt: Q01855)
m: 1 - 405 (UniProt: P38431)
| PDB | External Database | Details |
|---|---|---|
| Ala 147 | Gly 147 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ser 137 | Arg 137 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Leu 183 | Pro 183 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 44 |
| Total formula weight | 1679248.3 | |
| Non-Polymers* | Number of molecules | 11 |
| Total formula weight | 1931.1 | |
| All* | Total formula weight | 1681179.4 |
