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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6ZTJ

E. coli 70S-RNAP expressome complex in NusG-coupled state (38 nt intervening mRNA)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1AA16S ribosomal RNApolymer1542499888.41GenBank (CP054232.1)Escherichia coli
2AB30S ribosomal protein S2polymer24126781.71UniProt (C3TPN2)
Pfam (PF00318)
UniProt (by SIFTS) (P0A7V0)
In PDB		Escherichia coli
3AC30S ribosomal protein S3polymer23326031.31UniProt (C3SQX2)
Pfam (PF07650)
Pfam (PF00189)
UniProt (by SIFTS) (P0A7V3)
In PDB		Escherichia coli
4AD30S ribosomal protein S4polymer20623514.21UniProt (C3SR62)
Pfam (PF00163)
Pfam (PF01479)
UniProt (by SIFTS) (P0A7V8)
In PDB		Escherichia coli
5AE30S ribosomal protein S5polymer16717617.51UniProt (A0A090BZW5)
Pfam (PF00333)
Pfam (PF03719)
UniProt (by SIFTS) (P0A7W1)
In PDB		Escherichia coli
6AF30S ribosomal protein S6polymer13115197.01UniProt (W8T6F0)
Pfam (PF01250)
UniProt (by SIFTS) (P02358)
In PDB		Escherichia coli
7AG30S ribosomal protein S7polymer15617637.41UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coliSmall ribosomal subunit protein uS7
8AH30S ribosomal protein S8polymer13014146.61UniProt (C3SR12)
Pfam (PF00410)
UniProt (by SIFTS) (P0A7W7)
In PDB		Escherichia coli
9AI30S ribosomal protein S9polymer13014886.31UniProt (C3SRY2)
Pfam (PF00380)
UniProt (by SIFTS) (P0A7X3)
In PDB		Escherichia coli
10AJ30S ribosomal protein S10polymer10311755.61UniProt (C3SQT7)
Pfam (PF00338)
UniProt (by SIFTS) (P0A7R5)
In PDB		Escherichia coli
11AK30S ribosomal protein S11polymer12913871.01UniProt (C3SR57)
Pfam (PF00411)
UniProt (by SIFTS) (P0A7R9)
In PDB		Escherichia coli
12AL30S ribosomal protein S12polymer12413814.21UniProt (C3SQR7)
Pfam (PF00164)
UniProt (by SIFTS) (P0A7S3)
In PDB		Escherichia coli
13AM30S ribosomal protein S13polymer11813128.51UniProt (C3SR52)
Pfam (PF00416)
UniProt (by SIFTS) (P0A7S9)
In PDB		Escherichia coli
14AN30S ribosomal protein S14polymer10111606.61UniProt (C3SR07)
Pfam (PF00253)
UniProt (by SIFTS) (P0AG59)
In PDB		Escherichia coli
15AO30S ribosomal protein S15polymer8910290.81UniProt (C3SSQ7)
Pfam (PF00312)
UniProt (by SIFTS) (P0ADZ4)
In PDB		Escherichia coli
16AP30S ribosomal protein S16polymer829207.61UniProt (C3SYP2)
Pfam (PF00886)
UniProt (by SIFTS) (P0A7T3)
In PDB		Escherichia coli
17AQ30S ribosomal protein S17polymer849724.51UniProt (C3SQY7)
Pfam (PF00366)
UniProt (by SIFTS) (P0AG63)
In PDB		Escherichia coli
18AR30S ribosomal protein S18polymer759005.51UniProt (C3SFP7)
Pfam (PF01084)
UniProt (by SIFTS) (P0A7T7)
In PDB		Escherichia coli
19AS30S ribosomal protein S19polymer9210455.41UniProt (C3SQW2)
Pfam (PF00203)
UniProt (by SIFTS) (P0A7U3)
In PDB		Escherichia coli
20AT30S ribosomal protein S20polymer879708.51UniProt (C3TRH7)
Pfam (PF01649)
UniProt (by SIFTS) (P0A7U7)
In PDB		Escherichia coli
21AU30S ribosomal protein S21polymer718524.01UniProt (C3STZ7)
Pfam (PF01165)
UniProt (by SIFTS) (P68679)
In PDB		Escherichia coli
22AVmRNApolymer5317060.31synthetic construct
23AWtRNA(fmet) P-sitepolymer7724832.91Escherichia coli
24AXPhe-NH-tRNA(Phe) A-sitepolymer7624751.01GenBank (CP054236.1)Escherichia coli
25AY30S ribosomal protein S1polymer55761238.91UniProt (P0AG67)
Pfam (PF00575)
In PDB		Escherichia coliBacteriophage Q beta RNA-directed RNA polymerase subunit I,Small ribosomal subunit protein bS1
26BA23S ribosomal RNApolymer2904941820.61Escherichia coli
27BB5S ribosomal RNApolymer12038790.11GenBank (CP035706.1)Escherichia coli
28BC50S ribosomal protein L2polymer27329923.61UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coliribosomal protein uL2
29BD50S ribosomal protein L3polymer20922291.61UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coliLarge ribosomal subunit protein uL3
30BE50S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coliribosomal protein uL4
31BF50S ribosomal protein L5polymer17920333.61UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coliribosomal protein uL5
32BG50S ribosomal protein L6polymer17718932.81UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coliribosomal protein uL6
33BH50S ribosomal protein L9polymer14915789.01UniProt (P0A7R1)
Pfam (PF01281)
Pfam (PF03948)
In PDB		Escherichia coliribosomal protein bL9
34BI50S ribosomal protein L10polymer16517736.61UniProt (A0A073UC57)
Pfam (PF00466)
UniProt (by SIFTS) (P0A7J3)
In PDB		Escherichia coli
35BJ50S ribosomal protein L11polymer14214894.41UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coliribosomal protein uL11
36BK50S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coliribosomal protein uL13
37BL50S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coliribosomal protein uL14
38BM50S ribosomal protein L15polymer14414994.41UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coliLarge ribosomal subunit protein uL15
39BN50S ribosomal protein L16polymer13615327.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coliLarge ribosomal subunit protein uL16
40BO50S ribosomal protein L17polymer12714393.71UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coliribosomal protein bL17
41BP50S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coliribosomal protein uL18
42BQ50S ribosomal protein L19polymer11513159.31UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coliribosomal protein bL19
43BR50S ribosomal protein L20polymer11813528.01UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coliribosomal protein bL20
44BS50S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coliribosomal protein bL21
45BT50S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coliribosomal protein uL22
46BU50S ribosomal protein L23polymer10011222.21UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coliribosomal protein uL23
47BV50S ribosomal protein L24polymer10411339.31UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coliribosomal protein uL24
48BW50S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coliribosomal protein bL25
49BX50S ribosomal protein L27polymer859146.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coliribosomal protein bL27
50BY50S ribosomal protein L28polymer789027.61UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coliribosomal protein bL28
51BZ50S ribosomal protein L29polymer637286.51UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coliribosomal protein uL29
52B150S ribosomal protein L30polymer596554.81UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coliribosomal protein uL30
53B250S ribosomal protein L32polymer576463.41UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coliribosomal protein bL32
54B350S ribosomal protein L33polymer556388.61UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coliribosomal protein bL33
55B450S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coliribosomal protein bL34
56B550S ribosomal protein L35polymer657313.01UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coliRibosomal protein A, ribosomal protein bL35
57B650S ribosomal protein L36polymer505720.11UniProt (A0A2X1PTA3)
Pfam (PF00444)
UniProt (by SIFTS) (P0A7Q6)
In PDB		Escherichia coli
58B750S ribosomal protein L31polymer707887.11UniProt (U9XX47)
Pfam (PF01197)
UniProt (by SIFTS) (P0A7M9)
In PDB		Escherichia coli
59CNNon-template DNA strandpolymer3912063.81synthetic construct
60CTTemplate DNA strandpolymer3911872.61synthetic construct
61CA, CBDNA-directed RNA polymerase subunit alphapolymer32936558.72UniProt (P0A7Z4)
Pfam (PF01193)
Pfam (PF01000)
Pfam (PF03118)
In PDB		Escherichia coliRNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha
62CCDNA-directed RNA polymerase subunit betapolymer1342150820.91UniProt (P0A8V4)
Pfam (PF04563)
Pfam (PF04561)
Pfam (PF04565)
Pfam (PF10385)
Pfam (PF00562)
Pfam (PF04560)
UniProt (by SIFTS) (P0A8V2)
In PDB		Escherichia coliRNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta
63CDDNA-directed RNA polymerase subunit beta'polymer1407155366.81UniProt (P0A8T8)
Pfam (PF04997)
Pfam (PF00623)
Pfam (PF04983)
Pfam (PF05000)
Pfam (PF04998)
UniProt (by SIFTS) (P0A8T7)
In PDB		Escherichia coliRNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta'
64CEDNA-directed RNA polymerase subunit omegapolymer9110249.51UniProt (P0A800)
Pfam (PF01192)
In PDB		Escherichia coliRNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega
65CFTranscription termination/antitermination protein NusGpolymer18120502.41UniProt (P0AFG1)
Pfam (PF02357)
Pfam (PF00467)
UniProt (by SIFTS) (P0AFG0)
In PDB		Escherichia coli
66AA, BA, CD, AI, AW...MAGNESIUM IONnon-polymer24.3479Chemie (MG)
67AXPHENYLALANINEnon-polymer165.21Chemie (PHE)
68B7, CD, B6ZINC IONnon-polymer65.44Chemie (ZN)
Sequence modifications
AE: 1 - 167 (UniProt: A0A090BZW5)
PDBExternal DatabaseDetails
Cys 9Gly 9conflict
BM: 1 - 144 (UniProt: P02413)
PDBExternal DatabaseDetails
Val 77Ile 77conflict
CF: 1 - 181 (UniProt: P0AFG1)
PDBExternal DatabaseDetails
Ala 121Lys 121conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains66
Total formula weight2733415.3
Non-Polymers*Number of molecules484
Total formula weight12068.9
All*Total formula weight2745484.3
*Water molecules are not included.

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PDB entries from 2024-05-01

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