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6ZS9

Human mitochondrial ribosome in complex with ribosome recycling factor

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1039S ribosomal protein L32, mitochondrialpolymer18821437.81UniProt (Q9BYC8)
Pfam (PF01783)
In PDB
Homo sapiens (human)MRP-L32,Mitochondrial large ribosomal subunit protein bL32m
2139S ribosomal protein L33, mitochondrialpolymer657635.21UniProt (O75394)
Pfam (PF00471)
In PDB
Homo sapiens (human)MRP-L33,Mitochondrial large ribosomal subunit protein bL33m
3239S ribosomal protein L34, mitochondrialpolymer9210183.91UniProt (Q9BQ48)
Pfam (PF00468)
In PDB
Homo sapiens (human)MRP-L34,Mitochondrial large ribosomal subunit protein bL34m
4339S ribosomal protein L35, mitochondrialpolymer18821558.51UniProt (Q9NZE8)
Pfam (PF01632)
In PDB
Homo sapiens (human)MRP-L35,Mitochondrial large ribosomal subunit protein bL35m
5439S ribosomal protein L36, mitochondrialpolymer10311809.31UniProt (Q9P0J6)
Pfam (PF00444)
In PDB
Homo sapiens (human)MRP-L36,BRCA1-interacting protein 1,Mitochondrial large ribosomal subunit protein bL36m
6539S ribosomal protein L37, mitochondrialpolymer42348183.31UniProt (Q9BZE1)
Pfam (PF07147)
In PDB
Homo sapiens (human)MRP-L37,39S ribosomal protein L2,mitochondrial,MRP-L2,Mitochondrial large ribosomal subunit protein mL37
7639S ribosomal protein L38, mitochondrialpolymer38044659.41UniProt (Q96DV4)
Pfam (PF01161)
In PDB
Homo sapiens (human)MRP-L38,Mitochondrial large ribosomal subunit protein mL38
8739S ribosomal protein L39, mitochondrialpolymer33838764.81UniProt (Q9NYK5)
In PDB
Homo sapiens (human)MRP-L39,39S ribosomal protein L5,mitochondrial,MRP-L5,Mitochondrial large ribosomal subunit protein mL39
9839S ribosomal protein L40, mitochondrialpolymer20624534.41UniProt (Q9NQ50)
Pfam (PF09812)
In PDB
Homo sapiens (human)MRP-L40,Mitochondrial large ribosomal subunit protein mL40,Nuclear localization signal-containing protein deleted in velocardiofacial syndrome,Up-regulated in metastasis
10939S ribosomal protein L41, mitochondrialpolymer13715404.71UniProt (Q8IXM3)
Pfam (PF09809)
In PDB
Homo sapiens (human)MRP-L41,39S ribosomal protein L27 homolog,Bcl-2-interacting mitochondrial ribosomal protein L41,Cell proliferation-inducing gene 3 protein,MRP-L27 homolog,Mitochondrial large ribosomal subunit protein mL41
11XA16S rRNApolymer1559500025.61Homo sapiens
12A028S ribosomal protein S34, mitochondrialpolymer21825695.51UniProt (P82930)
Pfam (PF16053)
In PDB
Homo sapiens (human)S34mt,Mitochondrial small ribosomal subunit protein mS34
13A128S ribosomal protein S35, mitochondrialpolymer32336898.31UniProt (P82673)
Pfam (PF10213)
In PDB
Homo sapiens (human)S35mt,28S ribosomal protein S28,mitochondrial,S28mt,Mitochondrial small ribosomal subunit protein mS35
14A2Coiled-coil-helix-coiled-coil-helix domain-containing protein 1polymer11813498.81UniProt (Q96BP2)
Pfam (PF06747)
In PDB
Homo sapiens (human)28S ribosomal protein S37,mitochondrial,MRP-S37,Mitochondrial small ribosomal subunit protein mS37,Nuclear protein C2360
15A3Aurora kinase A-interacting proteinpolymer19922395.31UniProt (Q9NWT8)
Pfam (PF08213)
In PDB
Homo sapiens (human)AURKA-interacting protein,28S ribosomal protein S38,mitochondrial,MRP-S38,Mitochondrial small ribosomal subunit protein mS38
16A4Pentatricopeptide repeat domain-containing protein 3, mitochondrialpolymer63472759.71UniProt (Q96EY7)
Pfam (PF22330)
Pfam (PF13812)
In PDB
Homo sapiens (human)28S ribosomal protein S39,mitochondrial,MRP-S39,Mitochondrial small ribosomal subunit protein mS39,Transformation-related gene 15 protein,TRG-15
17A5Ribosome-recycling factor, mitochondrialpolymer19221372.81UniProt (Q96E11)
Pfam (PF01765)
In PDB
Homo sapiens (human)RRF,Ribosome-releasing factor,mitochondrial
18AA12S rRNApolymer951305171.61Homo sapiens
19AB28S ribosomal protein S2, mitochondrialpolymer29633298.21UniProt (Q9Y399)
Pfam (PF00318)
In PDB
Homo sapiens (human)S2mt,Mitochondrial small ribosomal subunit protein uS2m
20AC28S ribosomal protein S24, mitochondrialpolymer16719046.21UniProt (Q96EL2)
Pfam (PF14955)
In PDB
Homo sapiens (human)S24mt,Mitochondrial small ribosomal subunit protein uS3m,bMRP-47,bMRP47
21AD28S ribosomal protein S5, mitochondrialpolymer43048094.61UniProt (P82675)
Pfam (PF21251)
Pfam (PF00333)
Pfam (PF03719)
In PDB
Homo sapiens (human)S5mt,Mitochondrial small ribosomal subunit protein uS5m
22AE28S ribosomal protein S6, mitochondrialpolymer12514250.61UniProt (P82932)
Pfam (PF01250)
In PDB
Homo sapiens (human)S6mt,Mitochondrial small ribosomal subunit protein bS6m
23AF28S ribosomal protein S7, mitochondrialpolymer24228186.21UniProt (Q9Y2R9)
Pfam (PF00177)
In PDB
Homo sapiens (human)S7mt,Mitochondrial small ribosomal subunit protein uS7m,bMRP-27a,bMRP27a
24AG28S ribosomal protein S9, mitochondrialpolymer39645909.91UniProt (P82933)
Pfam (PF00380)
In PDB
Homo sapiens (human)S9mt,Mitochondrial small ribosomal subunit protein uS9m
25AH28S ribosomal protein S10, mitochondrialpolymer20123033.51UniProt (P82664)
Pfam (PF00338)
In PDB
Homo sapiens (human)S10mt,Mitochondrial small ribosomal subunit protein uS10m
26AI28S ribosomal protein S11, mitochondrialpolymer19420648.81UniProt (P82912)
Pfam (PF00411)
In PDB
Homo sapiens (human)S11mt,Cervical cancer proto-oncogene 2 protein,HCC-2,Mitochondrial small ribosomal subunit protein uS11m
27AJ28S ribosomal protein S12, mitochondrialpolymer13815200.91UniProt (O15235)
Pfam (PF00164)
In PDB
Homo sapiens (human)S12mt,MT-RPS12,Mitochondrial small ribosomal subunit protein uS12m
28AK28S ribosomal protein S14, mitochondrialpolymer12815168.81UniProt (O60783)
Pfam (PF00253)
In PDB
Homo sapiens (human)S14mt,Mitochondrial small ribosomal subunit protein uS14m
29AL28S ribosomal protein S15, mitochondrialpolymer25729903.31UniProt (P82914)
Pfam (PF00312)
In PDB
Homo sapiens (human)S15mt,Mitochondrial small ribosomal subunit protein uS15m
30AM28S ribosomal protein S16, mitochondrialpolymer13715371.91UniProt (Q9Y3D3)
Pfam (PF00886)
In PDB
Homo sapiens (human)S16mt,Mitochondrial small ribosomal subunit protein bS16m
31AN28S ribosomal protein S17, mitochondrialpolymer13014526.11UniProt (Q9Y2R5)
Pfam (PF00366)
In PDB
Homo sapiens (human)S17mt,Mitochondrial small ribosomal subunit protein uS17m
32AO28S ribosomal protein S18b, mitochondrialpolymer25829440.61UniProt (Q9Y676)
Pfam (PF01084)
In PDB
Homo sapiens (human)S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2,Mitochondrial small ribosomal subunit protein bS18b,Mitochondrial small ribosomal subunit protein mS40
33AP28S ribosomal protein S18c, mitochondrialpolymer14215876.81UniProt (Q9Y3D5)
Pfam (PF01084)
In PDB
Homo sapiens (human)S18mt-c,28S ribosomal protein S18-1,mitochondrial,MRP-S18-1,Mitochondrial small ribosomal subunit protein bS18c,Mitochondrial small ribosomal subunit protein bS18m
34AQ28S ribosomal protein S21, mitochondrialpolymer8610633.51UniProt (P82921)
Pfam (PF01165)
In PDB
Homo sapiens (human)S21mt,Mitochondrial small ribosomal subunit protein bS21m
35AR28S ribosomal protein S22, mitochondrialpolymer36041337.31UniProt (P82650)
Pfam (PF10245)
In PDB
Homo sapiens (human)S22mt,Mitochondrial small ribosomal subunit protein mS22
36AS28S ribosomal protein S23, mitochondrialpolymer19021805.71UniProt (Q9Y3D9)
Pfam (PF10484)
In PDB
Homo sapiens (human)S23mt,Mitochondrial small ribosomal subunit protein mS23
37AT28S ribosomal protein S25, mitochondrialpolymer17320146.41UniProt (P82663)
Pfam (PF05047)
In PDB
Homo sapiens (human)S25mt,Mitochondrial small ribosomal subunit protein mS25
38AU28S ribosomal protein S26, mitochondrialpolymer20524259.81UniProt (Q9BYN8)
Pfam (PF14943)
In PDB
Homo sapiens (human)S26mt,28S ribosomal protein S13,mitochondrial,S13mt,Mitochondrial small ribosomal subunit protein mS26
39AV28S ribosomal protein S27, mitochondrialpolymer41447669.31UniProt (Q92552)
Pfam (PF10037)
In PDB
Homo sapiens (human)S27mt,Mitochondrial ribosomal protein S27,Mitochondrial small ribosomal subunit protein mS27
40AW28S ribosomal protein S28, mitochondrialpolymer18720878.81UniProt (Q9Y2Q9)
Pfam (PF10246)
In PDB
Homo sapiens (human)S28mt,28S ribosomal protein S35,mitochondrial,S35mt,Mitochondrial small ribosomal subunit protein bS1m
41AX28S ribosomal protein S29, mitochondrialpolymer34839992.81UniProt (P51398)
Pfam (PF10236)
In PDB
Homo sapiens (human)S29mt,Death-associated protein 3,DAP-3,Ionizing radiation resistance conferring protein,Mitochondrial small ribosomal subunit protein mS29
42AY28S ribosomal protein S31, mitochondrialpolymer39545391.51UniProt (Q92665)
Pfam (PF15433)
In PDB
Homo sapiens (human)S31mt,Imogen 38,Mitochondrial small ribosomal subunit protein mS31
43AZ28S ribosomal protein S33, mitochondrialpolymer10612657.81UniProt (Q9Y291)
Pfam (PF08293)
In PDB
Homo sapiens (human)S33mt,Mitochondrial small ribosomal subunit protein mS33
44XBmt-tRNAValpolymer7323266.91Homo sapiens
45XD39S ribosomal protein L2, mitochondrialpolymer30533355.91UniProt (Q5T653)
Pfam (PF00181)
Pfam (PF03947)
In PDB
Homo sapiens (human)MRP-L2,Mitochondrial large ribosomal subunit protein uL2m
46XE39S ribosomal protein L3, mitochondrialpolymer34838689.61UniProt (P09001)
Pfam (PF00297)
In PDB
Homo sapiens (human)MRP-L3,Mitochondrial large ribosomal subunit protein uL3m
47XF39S ribosomal protein L4, mitochondrialpolymer31134970.21UniProt (Q9BYD3)
Pfam (PF00573)
In PDB
Homo sapiens (human)MRP-L4,Mitochondrial large ribosomal subunit protein uL4m
48XH39S ribosomal protein L9, mitochondrialpolymer26730296.41UniProt (Q9BYD2)
Pfam (PF01281)
Pfam (PF22078)
In PDB
Homo sapiens (human)MRP-L9,Mitochondrial large ribosomal subunit protein bL9m
49XI39S ribosomal protein L10, mitochondrialpolymer26129322.51UniProt (Q7Z7H8)
Pfam (PF00466)
In PDB
Homo sapiens (human)MRP-L10,39S ribosomal protein L8,mitochondrial,MRP-L8,Mitochondrial large ribosomal subunit protein uL10m
50XJ39S ribosomal protein L11, mitochondrialpolymer19220716.21UniProt (Q9Y3B7)
Pfam (PF03946)
Pfam (PF00298)
In PDB
Homo sapiens (human)MRP-L11,Mitochondrial large ribosomal subunit protein uL11m
51XK39S ribosomal protein L13, mitochondrialpolymer17820723.01UniProt (Q9BYD1)
Pfam (PF00572)
In PDB
Homo sapiens (human)MRP-L13,Mitochondrial large ribosomal subunit protein uL13m
52XL39S ribosomal protein L14, mitochondrialpolymer14515973.71UniProt (Q6P1L8)
Pfam (PF00238)
In PDB
Homo sapiens (human)MRP-L14,39S ribosomal protein L32,mitochondrial,MRP-L32,Mitochondrial large ribosomal subunit protein uL14m
53XM39S ribosomal protein L15, mitochondrialpolymer29633473.81UniProt (Q9P015)
Pfam (PF00828)
In PDB
Homo sapiens (human)MRP-L15,Mitochondrial large ribosomal subunit protein uL15m
54XN39S ribosomal protein L16, mitochondrialpolymer25128496.31UniProt (Q9NX20)
Pfam (PF00252)
In PDB
Homo sapiens (human)MRP-L16,Mitochondrial large ribosomal subunit protein uL16m
55XO39S ribosomal protein L17, mitochondrialpolymer17520083.31UniProt (Q9NRX2)
Pfam (PF01196)
In PDB
Homo sapiens (human)MRP-L17,LYST-interacting protein 2,Mitochondrial large ribosomal subunit protein bL17m
56XPMitochondrial ribosomal protein L18, isoform CRA_bpolymer17920465.31UniProt (A8K9D2)
Pfam (PF00861)
In PDB
Homo sapiens (human)cDNA FLJ76688,highly similar to Homo sapiens HSPC071 mRNA
57XQ39S ribosomal protein L19, mitochondrialpolymer29233585.01UniProt (P49406)
Pfam (PF01245)
In PDB
Homo sapiens (human)MRP-L19,39S ribosomal protein L15,mitochondrial,MRP-L15,Mitochondrial large ribosomal subunit protein bL19m
58XR39S ribosomal protein L20, mitochondrialpolymer14917479.71UniProt (Q9BYC9)
Pfam (PF00453)
In PDB
Homo sapiens (human)MRP-L20,Mitochondrial large ribosomal subunit protein bL20m
59XS39S ribosomal protein L21, mitochondrialpolymer20522847.71UniProt (Q7Z2W9)
Pfam (PF00829)
In PDB
Homo sapiens (human)MRP-L21,Mitochondrial large ribosomal subunit protein bL21m
60XT39S ribosomal protein L22, mitochondrialpolymer21224369.51UniProt (E7ESL0)
Pfam (PF00237)
In PDB
Homo sapiens (human)
61XU39S ribosomal protein L23, mitochondrialpolymer15317807.21UniProt (Q16540)
Pfam (PF00276)
In PDB
Homo sapiens (human)MRP-L23,L23 mitochondrial-related protein,Mitochondrial large ribosomal subunit protein uL23m,Ribosomal protein L23-like
62XV39S ribosomal protein L24, mitochondrialpolymer21624953.91UniProt (Q96A35)
Pfam (PF00467)
Pfam (PF17136)
In PDB
Homo sapiens (human)MRP-L24,Mitochondrial large ribosomal subunit protein uL24m
63XW39S ribosomal protein L27, mitochondrialpolymer14816102.91UniProt (Q9P0M9)
Pfam (PF01016)
In PDB
Homo sapiens (human)MRP-L27,Mitochondrial large ribosomal subunit protein bL27m
64XX39S ribosomal protein L28, mitochondrialpolymer25630202.91UniProt (Q13084)
Pfam (PF00830)
In PDB
Homo sapiens (human)MRP-L28,Melanoma antigen p15,Melanoma-associated antigen recognized by T-lymphocytes,Mitochondrial large ribosomal subunit protein bL28m
65XY39S ribosomal protein L47, mitochondrialpolymer25029508.51UniProt (Q9HD33)
Pfam (PF06984)
In PDB
Homo sapiens (human)MRP-L47,Mitochondrial large ribosomal subunit protein uL29m,Nasopharyngeal carcinoma metastasis-related protein 1
66XZ39S ribosomal protein L30, mitochondrialpolymer16118582.81UniProt (Q8TCC3)
Pfam (PF00327)
In PDB
Homo sapiens (human)MRP-L30,39S ribosomal protein L28,mitochondrial,MRP-L28,Mitochondrial large ribosomal subunit protein uL30m
67a39S ribosomal protein L42, mitochondrialpolymer14216691.21UniProt (Q9Y6G3)
Pfam (PF10210)
In PDB
Homo sapiens (human)MRP-L42,39S ribosomal protein L31,mitochondrial,MRP-L31,Mitochondrial large ribosomal subunit protein mL42
68b39S ribosomal protein L43, mitochondrialpolymer21523457.81UniProt (Q8N983)
Pfam (PF05047)
In PDB
Homo sapiens (human)MRP-L43,Mitochondrial large ribosomal subunit protein mL43,Mitochondrial ribosomal protein bMRP36a
69c39S ribosomal protein L44, mitochondrialpolymer33237583.31UniProt (Q9H9J2)
Pfam (PF22935)
Pfam (PF22892)
In PDB
Homo sapiens (human)MRP-L44,Mitochondrial large ribosomal subunit protein mL44
70d39S ribosomal protein L45, mitochondrialpolymer30635344.91UniProt (Q9BRJ2)
Pfam (PF04280)
In PDB
Homo sapiens (human)MRP-L45,Mitochondrial large ribosomal subunit protein mL45
71e39S ribosomal protein L46, mitochondrialpolymer27931748.11UniProt (Q9H2W6)
Pfam (PF11788)
In PDB
Homo sapiens (human)MRP-L46,Mitochondrial large ribosomal subunit protein mL46,P2ECSL
72f39S ribosomal protein L48, mitochondrialpolymer21223970.81UniProt (Q96GC5)
Pfam (PF00338)
In PDB
Homo sapiens (human)MRP-L48,Mitochondrial large ribosomal subunit protein mL48
73g39S ribosomal protein L49, mitochondrialpolymer16619225.01UniProt (Q13405)
Pfam (PF05046)
In PDB
Homo sapiens (human)MRP-L49,Mitochondrial large ribosomal subunit protein mL49,Neighbor of FAU,NOF,Protein NOF1
74h39S ribosomal protein L50, mitochondrialpolymer15818349.91UniProt (Q8N5N7)
Pfam (PF10501)
In PDB
Homo sapiens (human)MRP-L50,Mitochondrial large ribosomal subunit protein mL50
75i39S ribosomal protein L51, mitochondrialpolymer12815125.91UniProt (Q4U2R6)
Pfam (PF10244)
In PDB
Homo sapiens (human)MRP-L51,Mitochondrial large ribosomal subunit protein mL51,bMRP-64,bMRP64
76jcDNA FLJ76418, highly similar to Homo sapiens mitochondrial ribosomal protein L52 (MRPL52), transcript variant 1, mRNApolymer12313696.71UniProt (A8K7J6)
Pfam (PF18699)
In PDB
Homo sapiens (human)
77k39S ribosomal protein L53, mitochondrialpolymer11212125.91UniProt (Q96EL3)
Pfam (PF10780)
In PDB
Homo sapiens (human)MRP-L53,Mitochondrial large ribosomal subunit protein mL53
78l39S ribosomal protein L54, mitochondrialpolymer13815844.21UniProt (Q6P161)
Pfam (PF08561)
In PDB
Homo sapiens (human)MRP-L54,Mitochondrial large ribosomal subunit protein mL54
79m39S ribosomal protein L55, mitochondrialpolymer12815160.41UniProt (Q7Z7F7)
Pfam (PF09776)
In PDB
Homo sapiens (human)MRP-L55,Mitochondrial large ribosomal subunit protein bL31m,Mitochondrial large ribosomal subunit protein mL55
80oRibosomal protein 63, mitochondrialpolymer10212292.31UniProt (Q9BQC6)
Pfam (PF14978)
In PDB
Homo sapiens (human)hMRP63,Mitochondrial large ribosomal subunit protein mL63,Mitochondrial ribosomal protein 63,Mitochondrial ribosomal protein L57
81pPeptidyl-tRNA hydrolase ICT1, mitochondrialpolymer20623674.21UniProt (Q14197)
Pfam (PF00472)
In PDB
Homo sapiens (human)39S ribosomal protein L58,mitochondrial,MRP-L58,Digestion substraction 1,DS-1,Immature colon carcinoma transcript 1 protein,Mitochondrial large ribosomal subunit protein mL62
82qGrowth arrest and DNA damage-inducible proteins-interacting protein 1polymer19823101.21UniProt (Q8TAE8)
Pfam (PF10147)
In PDB
Homo sapiens (human)39S ribosomal protein L59,mitochondrial,MRP-L59,CKII beta-associating protein,CR6-interacting factor 1,CRIF1,Mitochondrial large ribosomal subunit protein mL64,Papillomavirus L2-interacting nuclear protein 1,PLINP-1,p53-responsive gene 6 protein
83r39S ribosomal protein S18a, mitochondrialpolymer19622224.11UniProt (Q9NVS2)
Pfam (PF01084)
In PDB
Homo sapiens (human)S18mt-a,39S ribosomal protein S18-3,mitochondrial,MRP-S18-3,Mitochondrial large ribosomal subunit protein bS18a,Mitochondrial large ribosomal subunit protein mL66
84s39S ribosomal protein S30, mitochondrialpolymer43950429.61UniProt (Q9NP92)
Pfam (PF07147)
In PDB
Homo sapiens (human)S30mt,Mitochondrial large ribosomal subunit protein mL65,Mitochondrial large ribosomal subunit protein mS30,Programmed cell death protein 9
85t1, t2, t3, t4, t5...39S ribosomal protein L12, mitochondrialpolymer19821378.26UniProt (P52815)
Pfam (PF16320)
Pfam (PF00542)
In PDB
Homo sapiens (human)MRP-L12,5c5-2,Mitochondrial large ribosomal subunit protein bL12m
86AQuinupristinpolymer81024.21BIRD (PRD_000505)synthetic construct
87r, 0, 4, AB, AO...ZINC IONnon-polymer65.47Chemie (ZN)
88XA, AA, XD, XI, XM...MAGNESIUM IONnon-polymer24.3195Chemie (MG)
89XA5-(2-DIETHYLAMINO-ETHANESULFONYL)-21-HYDROXY-10-ISOPROPYL-11,19-DIMETHYL-9,26-DIOXA-3,15,28-TRIAZA-TRICYCLO[23.2.1.00,255]OCTACOSA-1(27),12,17,19,25(28)-PENTAENE-2,8,14,23-TETRAONEnon-polymer690.81Chemie (DOL)
90AXGUANOSINE-5'-TRIPHOSPHATEnon-polymer523.21Chemie (GTP)
Sequence modifications
AQ: 2 - 87 (UniProt: P82921)
PDBExternal DatabaseDetails
Arg 50Cys 50conflict
d: 8 - 306 (UniProt: Q9BRJ2)
PDBExternal DatabaseDetails
Phe 62Glu 55conflict
Ala 63Phe 56conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains91
Total formula weight3019330.0
Non-Polymers*Number of molecules204
Total formula weight6411.4
All*Total formula weight3025741.4
*Water molecules are not included.

223790

PDB entries from 2024-08-14

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