6ZJ3
Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | S1 | 18S rRNA | polymer | 2315 | 747444.1 | 1 | Euglena gracilis | ||
2 | S2 | A-tRNA | polymer | 76 | 24599.7 | 1 | Euglena gracilis | ||
3 | S3 | P-tRNA | polymer | 76 | 24422.5 | 1 | Euglena gracilis | ||
4 | S4 | E-tRNA | polymer | 76 | 24509.6 | 1 | Euglena gracilis | ||
5 | S5 | A-site tRNA | polymer | 12 | 3756.3 | 1 | Euglena gracilis | ||
6 | SA | Ribosomal protein eS1 | polymer | 249 | 28518.2 | 1 | Euglena gracilis | ||
7 | SB | Ribosomal protein uS2 | polymer | 261 | 29244.5 | 1 | Euglena gracilis | ||
8 | SC | Ribosomal protein uS3 | polymer | 220 | 24771.9 | 1 | Euglena gracilis | ||
9 | SD | Ribosomal protein uS4 | polymer | 196 | 22460.3 | 1 | Euglena gracilis | ||
10 | SE | Ribosomal protein eS4 | polymer | 271 | 31032.9 | 1 | Euglena gracilis | ||
11 | SF | Ribosomal protein uS5 | polymer | 257 | 27936.9 | 1 | Euglena gracilis | ||
12 | SG | Ribosomal protein eS6 | polymer | 283 | 31995.0 | 1 | Euglena gracilis | ||
13 | SH | Ribosomal protein uS7 | polymer | 190 | 21473.8 | 1 | Euglena gracilis | ||
14 | SI | Ribosomal protein eS7 | polymer | 200 | 22812.7 | 1 | Euglena gracilis | ||
15 | SJ | Ribosomal protein uS8 | polymer | 130 | 14943.6 | 1 | Euglena gracilis | ||
16 | SK | Ribosomal protein eS8 | polymer | 304 | 35391.4 | 1 | Euglena gracilis | ||
17 | SL | Ribosomal protein uS9 | polymer | 151 | 17233.4 | 1 | Euglena gracilis | ||
18 | SM | Ribosomal protein uS10 | polymer | 121 | 13344.7 | 1 | Euglena gracilis | ||
19 | SN | Ribosomal protein eS10 | polymer | 152 | 17060.5 | 1 | Euglena gracilis | ||
20 | SO | Ribosomal protein uS11 | polymer | 152 | 16397.9 | 1 | Euglena gracilis | ||
21 | SP | Ribosomal protein uS12 | polymer | 143 | 15929.7 | 1 | Euglena gracilis | ||
22 | SQ | Ribosomal protein eS12 | polymer | 139 | 15109.3 | 1 | Euglena gracilis | ||
23 | SR | Ribosomal protein uS13 | polymer | 153 | 17632.7 | 1 | Euglena gracilis | ||
24 | SS | Ribosomal protein uS14 | polymer | 55 | 6527.7 | 1 | Euglena gracilis | ||
25 | ST | Ribosomal protein uS15 | polymer | 151 | 17121.2 | 1 | Euglena gracilis | ||
26 | SU | Ribosomal protein uS17 | polymer | 164 | 19277.7 | 1 | Euglena gracilis | ||
27 | SV | Ribosomal protein eS17 | polymer | 145 | 16399.2 | 1 | Euglena gracilis | ||
28 | SW | Ribosomal protein uS19 | polymer | 150 | 17230.6 | 1 | Euglena gracilis | ||
29 | SX | Ribosomal protein eS19 | polymer | 148 | 16477.2 | 1 | Euglena gracilis | ||
30 | SY | Ribosomal protein eS21 | polymer | 96 | 10532.9 | 1 | Euglena gracilis | ||
31 | SZ | Ribosomal protein eS24 | polymer | 137 | 16123.1 | 1 | Euglena gracilis | ||
32 | Sa | Ribosomal protein eS25 | polymer | 119 | 13203.6 | 1 | Euglena gracilis | ||
33 | Sb | Ribosomal protein eS26 | polymer | 120 | 13415.8 | 1 | Euglena gracilis | ||
34 | Sc | Ribosomal protein eS27 | polymer | 86 | 9564.3 | 1 | Euglena gracilis | ||
35 | Sd | Ribosomal protein eS28 | polymer | 76 | 8510.8 | 1 | Euglena gracilis | ||
36 | Se | Ribosomal protein eS30 | polymer | 67 | 7194.6 | 1 | Euglena gracilis | ||
37 | Sf | Ribosomal protein eS31 | polymer | 157 | 17859.9 | 1 | Euglena gracilis | ||
38 | Sg | Ribosomal protein eSEug1 | polymer | 295 | 32760.0 | 1 | Euglena gracilis | ||
39 | Sh | RACK1 | polymer | 317 | 34755.3 | 1 | Euglena gracilis | ||
40 | LA | 5.8S rRNA | polymer | 163 | 52665.3 | 1 | Euglena gracilis | ||
41 | LB | LSU rRNA chain 1 | polymer | 133 | 42961.7 | 1 | Euglena gracilis | ||
42 | LC | LSU rRNA chain 2 | polymer | 350 | 113512.1 | 1 | Euglena gracilis | ||
43 | LD | LSU rRNA chain 3 | polymer | 116 | 37346.1 | 1 | Euglena gracilis | ||
44 | LE | LSU rRNA chain 4 | polymer | 698 | 225354.7 | 1 | Euglena gracilis | ||
45 | LF | LSU rRNA chain 5 | polymer | 527 | 170807.7 | 1 | Euglena gracilis | ||
46 | LG | LSU rRNA chain 6 | polymer | 234 | 75508.8 | 1 | Euglena gracilis | ||
47 | LH | LSU rRNA chain 7 | polymer | 744 | 240661.0 | 1 | Euglena gracilis | ||
48 | LI | LSU rRNA chain 8 | polymer | 617 | 199055.3 | 1 | Euglena gracilis | ||
49 | LJ | LSU rRNA chain 9 | polymer | 164 | 52952.5 | 1 | Euglena gracilis | ||
50 | LK | LSU rRNA chain 10 | polymer | 64 | 20618.3 | 1 | Euglena gracilis | ||
51 | LL | LSU rRNA chain 11 | polymer | 95 | 30874.4 | 1 | Euglena gracilis | ||
52 | LM | LSU rRNA chain 12 | polymer | 58 | 18673.2 | 1 | Euglena gracilis | ||
53 | LN | LSU rRNA chain 13 | polymer | 86 | 27779.4 | 1 | Euglena gracilis | ||
54 | LO | 5S rRNA | polymer | 120 | 38652.9 | 1 | Euglena gracilis | ||
55 | LP | Ribosomal protein uL2 | polymer | 264 | 28784.8 | 1 | Euglena gracilis | ||
56 | LQ | Ribosomal protein uL3 | polymer | 410 | 46348.7 | 1 | Euglena gracilis | ||
57 | LR | Ribosomal protein uL4 | polymer | 375 | 41993.6 | 1 | Euglena gracilis | ||
58 | LS | Ribosomal protein uL5 | polymer | 191 | 21938.7 | 1 | Euglena gracilis | ||
59 | LT | Ribosomal protein uL6 | polymer | 193 | 22030.7 | 1 | Euglena gracilis | ||
60 | LU | Ribosomal protein eL6 | polymer | 195 | 22615.9 | 1 | Euglena gracilis | ||
61 | LV | 60S ribosomal protein L7a | polymer | 295 | 32999.2 | 1 | UniProt (Q4VH13) Pfam (PF01248) In PDB | Euglena gracilis | |
62 | LW | Ribosomal protein uL13 | polymer | 209 | 24602.6 | 1 | Euglena gracilis | ||
63 | LX | Ribosomal protein eL13 | polymer | 226 | 25964.7 | 1 | Euglena gracilis | ||
64 | LY | Ribosomal protein uL14 | polymer | 140 | 14991.8 | 1 | Euglena gracilis | ||
65 | LZ | Ribosomal protein eL14 | polymer | 219 | 25592.4 | 1 | Euglena gracilis | ||
66 | La | Ribosomal protein uL15 | polymer | 152 | 17320.3 | 1 | Euglena gracilis | ||
67 | Lb | Ribosomal protein eL15 | polymer | 204 | 24447.9 | 1 | Euglena gracilis | ||
68 | Lc | 60S ribosomal protein L10 | polymer | 215 | 24695.1 | 1 | UniProt (Q39724) Pfam (PF00252) In PDB | Euglena gracilis | |
69 | Ld | Ribosomal protein uL18 | polymer | 260 | 29531.2 | 1 | Euglena gracilis | ||
70 | Le | Ribosomal protein eL18 | polymer | 193 | 21935.4 | 1 | Euglena gracilis | ||
71 | Lf | Ribosomal protein eL19 | polymer | 250 | 29130.9 | 1 | Euglena gracilis | ||
72 | Lg | Ribosomal protein eL20 | polymer | 182 | 21398.3 | 1 | Euglena gracilis | ||
73 | Lh | Ribosomal protein eL21 | polymer | 159 | 18279.6 | 1 | Euglena gracilis | ||
74 | Li | Ribosomal protein uL22 | polymer | 164 | 18831.9 | 1 | Euglena gracilis | ||
75 | Lj | Ribosomal protein eL22 | polymer | 170 | 18961.9 | 1 | Euglena gracilis | ||
76 | Lk | Ribosomal protein uL23 | polymer | 163 | 18592.2 | 1 | Euglena gracilis | ||
77 | Ll | Ribosomal protein uL24 | polymer | 146 | 16812.8 | 1 | Euglena gracilis | ||
78 | Lm | Ribosomal protein eL24 | polymer | 157 | 17910.4 | 1 | Euglena gracilis | ||
79 | Ln | Ribosomal protein eL27 | polymer | 134 | 15562.7 | 1 | Euglena gracilis | ||
80 | Lo | Ribosomal protein eLEgr1 | polymer | 72 | 7961.1 | 1 | Euglena gracilis | ||
81 | Lp | Ribosomal protein uL29 | polymer | 123 | 14662.9 | 1 | Euglena gracilis | ||
82 | Lq | Ribosomal protein eL29 | polymer | 117 | 13747.2 | 1 | Euglena gracilis | ||
83 | Lr | Ribosomal protein uL30 | polymer | 242 | 28755.6 | 1 | Euglena gracilis | ||
84 | Ls | Ribosomal protein eL30 | polymer | 109 | 12053.0 | 1 | Euglena gracilis | ||
85 | Lt | Ribosomal protein eL31 | polymer | 151 | 17630.3 | 1 | Euglena gracilis | ||
86 | Lu | Ribosomal protein eL32 | polymer | 139 | 16413.3 | 1 | Euglena gracilis | ||
87 | Lv | Ribosomal protein eL33 | polymer | 115 | 13155.9 | 1 | Euglena gracilis | ||
88 | Lw | Ribosomal protein eL34 | polymer | 128 | 14908.8 | 1 | Euglena gracilis | ||
89 | Lx | Ribosomal protein eL36 | polymer | 106 | 12423.2 | 1 | Euglena gracilis | ||
90 | Ly | Ribosomal protein eL37 | polymer | 117 | 13528.1 | 1 | Euglena gracilis | ||
91 | Lz | Ribosomal protein eL38 | polymer | 82 | 9478.5 | 1 | Euglena gracilis | ||
92 | L1 | Ribosomal protein eL39 | polymer | 51 | 6499.9 | 1 | Euglena gracilis | ||
93 | L2 | Ribosomal protein eL40 | polymer | 126 | 14220.8 | 1 | Euglena gracilis | ||
94 | L3 | Ribosomal protein eL41 | polymer | 34 | 4502.6 | 1 | Euglena gracilis | ||
95 | L5 | Ribosomal protein eL42 | polymer | 92 | 10559.5 | 1 | Euglena gracilis | ||
96 | L4 | Ribosomal protein eL43 | polymer | 106 | 12340.9 | 1 | Euglena gracilis | ||
97 | L6 | Ribosomal protein eLEgr2 | polymer | 69 | 8128.5 | 1 | Euglena gracilis | ||
98 | L7 | Ribosomal protein eLEgr3 | polymer | 64 | 7499.7 | 1 | Euglena gracilis | ||
99 | Sb, Ly, L2, L5, L4 | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
100 | water | water | 18.0 | 1194 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 98 |
Total formula weight | 3672142.3 | |
Non-Polymers* | Number of molecules | 5 |
Total formula weight | 327.0 | |
All* | Total formula weight | 3672469.3 |