6ZJ3
Cryo-EM structure of the highly atypical cytoplasmic ribosome of Euglena gracilis
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (S1) | 18S rRNA | polymer | 2315 | 747444.1 | 1 | Euglena gracilis | ||
| 2 | B (S2) | A-tRNA | polymer | 76 | 24599.7 | 1 | Euglena gracilis | ||
| 3 | C (S3) | P-tRNA | polymer | 76 | 24422.5 | 1 | Euglena gracilis | ||
| 4 | D (S4) | E-tRNA | polymer | 76 | 24509.6 | 1 | Euglena gracilis | ||
| 5 | E (S5) | A-site tRNA | polymer | 12 | 3756.3 | 1 | Euglena gracilis | ||
| 6 | F (SA) | Ribosomal protein eS1 | polymer | 249 | 28518.2 | 1 | Euglena gracilis | ||
| 7 | G (SB) | Ribosomal protein uS2 | polymer | 261 | 29244.5 | 1 | Euglena gracilis | ||
| 8 | H (SC) | Ribosomal protein uS3 | polymer | 220 | 24771.9 | 1 | Euglena gracilis | ||
| 9 | I (SD) | Ribosomal protein uS4 | polymer | 196 | 22460.3 | 1 | Euglena gracilis | ||
| 10 | J (SE) | Ribosomal protein eS4 | polymer | 271 | 31032.9 | 1 | Euglena gracilis | ||
| 11 | K (SF) | Ribosomal protein uS5 | polymer | 257 | 27936.9 | 1 | Euglena gracilis | ||
| 12 | L (SG) | Ribosomal protein eS6 | polymer | 283 | 31995.0 | 1 | Euglena gracilis | ||
| 13 | M (SH) | Ribosomal protein uS7 | polymer | 190 | 21473.8 | 1 | Euglena gracilis | ||
| 14 | N (SI) | Ribosomal protein eS7 | polymer | 200 | 22812.7 | 1 | Euglena gracilis | ||
| 15 | O (SJ) | Ribosomal protein uS8 | polymer | 130 | 14943.6 | 1 | Euglena gracilis | ||
| 16 | P (SK) | Ribosomal protein eS8 | polymer | 304 | 35391.4 | 1 | Euglena gracilis | ||
| 17 | Q (SL) | Ribosomal protein uS9 | polymer | 151 | 17233.4 | 1 | Euglena gracilis | ||
| 18 | R (SM) | Ribosomal protein uS10 | polymer | 121 | 13344.7 | 1 | Euglena gracilis | ||
| 19 | S (SN) | Ribosomal protein eS10 | polymer | 152 | 17060.5 | 1 | Euglena gracilis | ||
| 20 | T (SO) | Ribosomal protein uS11 | polymer | 152 | 16397.9 | 1 | Euglena gracilis | ||
| 21 | U (SP) | Ribosomal protein uS12 | polymer | 143 | 15929.7 | 1 | Euglena gracilis | ||
| 22 | V (SQ) | Ribosomal protein eS12 | polymer | 139 | 15109.3 | 1 | Euglena gracilis | ||
| 23 | W (SR) | Ribosomal protein uS13 | polymer | 153 | 17632.7 | 1 | Euglena gracilis | ||
| 24 | X (SS) | Ribosomal protein uS14 | polymer | 55 | 6527.7 | 1 | Euglena gracilis | ||
| 25 | Y (ST) | Ribosomal protein uS15 | polymer | 151 | 17121.2 | 1 | Euglena gracilis | ||
| 26 | Z (SU) | Ribosomal protein uS17 | polymer | 164 | 19277.7 | 1 | Euglena gracilis | ||
| 27 | AA (SV) | Ribosomal protein eS17 | polymer | 145 | 16399.2 | 1 | Euglena gracilis | ||
| 28 | BA (SW) | Ribosomal protein uS19 | polymer | 150 | 17230.6 | 1 | Euglena gracilis | ||
| 29 | CA (SX) | Ribosomal protein eS19 | polymer | 148 | 16477.2 | 1 | Euglena gracilis | ||
| 30 | DA (SY) | Ribosomal protein eS21 | polymer | 96 | 10532.9 | 1 | Euglena gracilis | ||
| 31 | EA (SZ) | Ribosomal protein eS24 | polymer | 137 | 16123.1 | 1 | Euglena gracilis | ||
| 32 | FA (Sa) | Ribosomal protein eS25 | polymer | 119 | 13203.6 | 1 | Euglena gracilis | ||
| 33 | GA (Sb) | Ribosomal protein eS26 | polymer | 120 | 13415.8 | 1 | Euglena gracilis | ||
| 34 | HA (Sc) | Ribosomal protein eS27 | polymer | 86 | 9564.3 | 1 | Euglena gracilis | ||
| 35 | IA (Sd) | Ribosomal protein eS28 | polymer | 76 | 8510.8 | 1 | Euglena gracilis | ||
| 36 | JA (Se) | Ribosomal protein eS30 | polymer | 67 | 7194.6 | 1 | Euglena gracilis | ||
| 37 | KA (Sf) | Ribosomal protein eS31 | polymer | 157 | 17859.9 | 1 | Euglena gracilis | ||
| 38 | LA (Sg) | Ribosomal protein eSEug1 | polymer | 295 | 32760.0 | 1 | Euglena gracilis | ||
| 39 | MA (Sh) | RACK1 | polymer | 317 | 34755.3 | 1 | Euglena gracilis | ||
| 40 | NA (LA) | 5.8S rRNA | polymer | 163 | 52665.3 | 1 | Euglena gracilis | ||
| 41 | OA (LB) | LSU rRNA chain 1 | polymer | 133 | 42961.7 | 1 | Euglena gracilis | ||
| 42 | PA (LC) | LSU rRNA chain 2 | polymer | 350 | 113512.1 | 1 | Euglena gracilis | ||
| 43 | QA (LD) | LSU rRNA chain 3 | polymer | 116 | 37346.1 | 1 | Euglena gracilis | ||
| 44 | RA (LE) | LSU rRNA chain 4 | polymer | 698 | 225354.7 | 1 | Euglena gracilis | ||
| 45 | SA (LF) | LSU rRNA chain 5 | polymer | 527 | 170807.7 | 1 | Euglena gracilis | ||
| 46 | TA (LG) | LSU rRNA chain 6 | polymer | 234 | 75508.8 | 1 | Euglena gracilis | ||
| 47 | UA (LH) | LSU rRNA chain 7 | polymer | 744 | 240661.0 | 1 | Euglena gracilis | ||
| 48 | VA (LI) | LSU rRNA chain 8 | polymer | 617 | 199055.3 | 1 | Euglena gracilis | ||
| 49 | WA (LJ) | LSU rRNA chain 9 | polymer | 164 | 52952.5 | 1 | Euglena gracilis | ||
| 50 | XA (LK) | LSU rRNA chain 10 | polymer | 64 | 20618.3 | 1 | Euglena gracilis | ||
| 51 | YA (LL) | LSU rRNA chain 11 | polymer | 95 | 30874.4 | 1 | Euglena gracilis | ||
| 52 | ZA (LM) | LSU rRNA chain 12 | polymer | 58 | 18673.2 | 1 | Euglena gracilis | ||
| 53 | AB (LN) | LSU rRNA chain 13 | polymer | 86 | 27779.4 | 1 | Euglena gracilis | ||
| 54 | BB (LO) | 5S rRNA | polymer | 120 | 38652.9 | 1 | Euglena gracilis | ||
| 55 | CB (LP) | Ribosomal protein uL2 | polymer | 264 | 28784.8 | 1 | Euglena gracilis | ||
| 56 | DB (LQ) | Ribosomal protein uL3 | polymer | 410 | 46348.7 | 1 | Euglena gracilis | ||
| 57 | EB (LR) | Ribosomal protein uL4 | polymer | 375 | 41993.6 | 1 | Euglena gracilis | ||
| 58 | FB (LS) | Ribosomal protein uL5 | polymer | 191 | 21938.7 | 1 | Euglena gracilis | ||
| 59 | GB (LT) | Ribosomal protein uL6 | polymer | 193 | 22030.7 | 1 | Euglena gracilis | ||
| 60 | HB (LU) | Ribosomal protein eL6 | polymer | 195 | 22615.9 | 1 | Euglena gracilis | ||
| 61 | IB (LV) | 60S ribosomal protein L7a | polymer | 295 | 32999.2 | 1 | UniProt (Q4VH13) Pfam (PF01248) | Euglena gracilis | |
| 62 | JB (LW) | Ribosomal protein uL13 | polymer | 209 | 24602.6 | 1 | Euglena gracilis | ||
| 63 | KB (LX) | Ribosomal protein eL13 | polymer | 226 | 25964.7 | 1 | Euglena gracilis | ||
| 64 | LB (LY) | Ribosomal protein uL14 | polymer | 140 | 14991.8 | 1 | Euglena gracilis | ||
| 65 | MB (LZ) | Ribosomal protein eL14 | polymer | 219 | 25592.4 | 1 | Euglena gracilis | ||
| 66 | NB (La) | Ribosomal protein uL15 | polymer | 152 | 17320.3 | 1 | Euglena gracilis | ||
| 67 | OB (Lb) | Ribosomal protein eL15 | polymer | 204 | 24447.9 | 1 | Euglena gracilis | ||
| 68 | PB (Lc) | 60S ribosomal protein L10 | polymer | 215 | 24695.1 | 1 | UniProt (Q39724) Pfam (PF00252) | Euglena gracilis | |
| 69 | QB (Ld) | Ribosomal protein uL18 | polymer | 260 | 29531.2 | 1 | Euglena gracilis | ||
| 70 | RB (Le) | Ribosomal protein eL18 | polymer | 193 | 21935.4 | 1 | Euglena gracilis | ||
| 71 | SB (Lf) | Ribosomal protein eL19 | polymer | 250 | 29130.9 | 1 | Euglena gracilis | ||
| 72 | TB (Lg) | Ribosomal protein eL20 | polymer | 182 | 21398.3 | 1 | Euglena gracilis | ||
| 73 | UB (Lh) | Ribosomal protein eL21 | polymer | 159 | 18279.6 | 1 | Euglena gracilis | ||
| 74 | VB (Li) | Ribosomal protein uL22 | polymer | 164 | 18831.9 | 1 | Euglena gracilis | ||
| 75 | WB (Lj) | Ribosomal protein eL22 | polymer | 170 | 18961.9 | 1 | Euglena gracilis | ||
| 76 | XB (Lk) | Ribosomal protein uL23 | polymer | 163 | 18592.2 | 1 | Euglena gracilis | ||
| 77 | YB (Ll) | Ribosomal protein uL24 | polymer | 146 | 16812.8 | 1 | Euglena gracilis | ||
| 78 | ZB (Lm) | Ribosomal protein eL24 | polymer | 157 | 17910.4 | 1 | Euglena gracilis | ||
| 79 | AC (Ln) | Ribosomal protein eL27 | polymer | 134 | 15562.7 | 1 | Euglena gracilis | ||
| 80 | BC (Lo) | Ribosomal protein eLEgr1 | polymer | 72 | 7961.1 | 1 | Euglena gracilis | ||
| 81 | CC (Lp) | Ribosomal protein uL29 | polymer | 123 | 14662.9 | 1 | Euglena gracilis | ||
| 82 | DC (Lq) | Ribosomal protein eL29 | polymer | 117 | 13747.2 | 1 | Euglena gracilis | ||
| 83 | EC (Lr) | Ribosomal protein uL30 | polymer | 242 | 28755.6 | 1 | Euglena gracilis | ||
| 84 | FC (Ls) | Ribosomal protein eL30 | polymer | 109 | 12053.0 | 1 | Euglena gracilis | ||
| 85 | GC (Lt) | Ribosomal protein eL31 | polymer | 151 | 17630.3 | 1 | Euglena gracilis | ||
| 86 | HC (Lu) | Ribosomal protein eL32 | polymer | 139 | 16413.3 | 1 | Euglena gracilis | ||
| 87 | IC (Lv) | Ribosomal protein eL33 | polymer | 115 | 13155.9 | 1 | Euglena gracilis | ||
| 88 | JC (Lw) | Ribosomal protein eL34 | polymer | 128 | 14908.8 | 1 | Euglena gracilis | ||
| 89 | KC (Lx) | Ribosomal protein eL36 | polymer | 106 | 12423.2 | 1 | Euglena gracilis | ||
| 90 | LC (Ly) | Ribosomal protein eL37 | polymer | 117 | 13528.1 | 1 | Euglena gracilis | ||
| 91 | MC (Lz) | Ribosomal protein eL38 | polymer | 82 | 9478.5 | 1 | Euglena gracilis | ||
| 92 | NC (L1) | Ribosomal protein eL39 | polymer | 51 | 6499.9 | 1 | Euglena gracilis | ||
| 93 | OC (L2) | Ribosomal protein eL40 | polymer | 126 | 14220.8 | 1 | Euglena gracilis | ||
| 94 | PC (L3) | Ribosomal protein eL41 | polymer | 34 | 4502.6 | 1 | Euglena gracilis | ||
| 95 | QC (L5) | Ribosomal protein eL42 | polymer | 92 | 10559.5 | 1 | Euglena gracilis | ||
| 96 | RC (L4) | Ribosomal protein eL43 | polymer | 106 | 12340.9 | 1 | Euglena gracilis | ||
| 97 | SC (L6) | Ribosomal protein eLEgr2 | polymer | 69 | 8128.5 | 1 | Euglena gracilis | ||
| 98 | TC (L7) | Ribosomal protein eLEgr3 | polymer | 64 | 7499.7 | 1 | Euglena gracilis | ||
| 99 | UC, VC, WC, XC, YC (Sb, Ly, L2, L5, L4) | ZINC ION | non-polymer | 65.4 | 5 | Chemie (ZN) | |||
| 100 | AD, AE, AF, BD, BE... (S2, LF, Lq, S3, LG...) | water | water | 18.0 | 1194 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 98 |
| Total formula weight | 3672142.3 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 327.0 | |
| All* | Total formula weight | 3672469.3 |
