6Z8J
Structure of [NiFeSe] hydrogenase from Desulfovibrio vulgaris hildenborough pressurized with Oxygen gas - structure wtO2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, C (A, C) | Periplasmic [NiFeSe] hydrogenase, small subunit | polymer | 283 | 30261.6 | 2 | UniProt (Q72AS4) Pfam (PF01058) Pfam (PF14720) | Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) | |
| 2 | B, D (B, D) | Periplasmic [NiFeSe] hydrogenase, large subunit, selenocysteine-containing | polymer | 484 | 53383.1 | 2 | UniProt (Q72AS3) Pfam (PF00374) | Desulfovibrio vulgaris (strain Hildenborough / ATCC 29579 / DSM 644 / NCIMB 8303) | |
| 3 | E, F, G, R, S... (A, C) | IRON/SULFUR CLUSTER | non-polymer | 351.6 | 6 | Chemie (SF4) | |||
| 4 | H, U (A, C) | oxygen-damaged SF4 | non-polymer | 383.6 | 2 | Chemie (6ML) | |||
| 5 | I, O, P, V (A, B, C) | GLYCEROL | non-polymer | 92.1 | 4 | Chemie (GOL) | |||
| 6 | J, W (B, D) | CARBONMONOXIDE-(DICYANO) IRON | non-polymer | 135.9 | 2 | Chemie (FCO) | |||
| 7 | K, X (B, D) | NICKEL (II) ION | non-polymer | 58.7 | 2 | Chemie (NI) | |||
| 8 | L, Y (B, D) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) | |||
| 9 | M, Z (B, D) | HYDROSULFURIC ACID | non-polymer | 34.1 | 2 | Chemie (H2S) | |||
| 10 | AA, N (D, B) | CHLORIDE ION | non-polymer | 35.5 | 2 | Chemie (CL) | |||
| 11 | BA, Q (D, B) | OXYGEN MOLECULE | non-polymer | 32.0 | 2 | Chemie (OXY) | |||
| 12 | CA, DA, EA, FA (A, B, C, D) | water | water | 18.0 | 1013 | Chemie (HOH) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 4 |
| Total formula weight | 167289.3 | |
| Non-Polymers* | Number of molecules | 24 |
| Total formula weight | 3949.4 | |
| All* | Total formula weight | 171238.7 |
