6Z1P
Structure of the mitochondrial ribosome from Tetrahymena thermophila
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (Aa) | LSU rRNA_1 | polymer | 278 | 89365.7 | 1 | GenBank (15011465) | Tetrahymena thermophila (strain SB210) | |
| 2 | B (Ab) | LSU rRNA_2 | polymer | 2314 | 743593.4 | 1 | GenBank (15011465) | Tetrahymena thermophila (strain SB210) | |
| 3 | C (Ac) | Ribosomal protein L2 | polymer | 262 | 29974.1 | 1 | UniProt (Q951B6) | Tetrahymena thermophila (strain SB210) | |
| 4 | D (Ad) | 50S ribosomal protein L3 | polymer | 439 | 49883.4 | 1 | UniProt (Q22HG3) Pfam (PF00297) | Tetrahymena thermophila (strain SB210) | |
| 5 | E (Ae) | 50S ribosomal protein L4 | polymer | 358 | 41992.8 | 1 | UniProt (I7MGP2) Pfam (PF00573) | Tetrahymena thermophila (strain SB210) | |
| 6 | F (Af) | Ymf69 | polymer | 68 | 8389.2 | 1 | UniProt (Q951A2) | Tetrahymena thermophila (strain SB210) | |
| 7 | G (Ag) | Ymf60 | polymer | 179 | 21681.2 | 1 | UniProt (Q951A9) | Tetrahymena thermophila (strain SB210) | |
| 8 | H (Ah) | bL7/L12m | polymer | 106 | 9039.1 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 9 | I (Ai) | bL7/12m | polymer | 61 | 5209.4 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 10 | J (Aj) | bL7/12m | polymer | 69 | 5890.3 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 11 | K (Ak) | Ribosomal protein L7/L12 carboxy-terminal domain protein | polymer | 105 | 12385.2 | 1 | UniProt (Q24IM4) | Tetrahymena thermophila (strain SB210) | |
| 12 | L (Al) | Ribosomal protein L9, amine-terminal domain protein | polymer | 223 | 26227.0 | 1 | UniProt (Q24C33) Pfam (PF01281) | Tetrahymena thermophila (strain SB210) | |
| 13 | M (Am) | Ymf74 | polymer | 166 | 19964.8 | 1 | UniProt (Q951B5) | Tetrahymena thermophila (strain SB210) | |
| 14 | N (An) | Ribosomal protein L11, amine-terminal domain protein | polymer | 158 | 17816.1 | 1 | UniProt (W7XH77) Pfam (PF03946) Pfam (PF00298) | Tetrahymena thermophila (strain SB210) | |
| 15 | O (Ao) | 50S ribosomal protein L13 | polymer | 391 | 45100.3 | 1 | UniProt (W7X626) Pfam (PF00572) | Tetrahymena thermophila (strain SB210) | |
| 16 | P (Ap) | Ribosomal protein L14 | polymer | 119 | 13612.5 | 1 | UniProt (Q950Y1) | Tetrahymena thermophila (strain SB210) | |
| 17 | Q (Aq) | Ribosomal protein L15, putative | polymer | 305 | 34669.4 | 1 | UniProt (I7MF78) Pfam (PF00828) | Tetrahymena thermophila (strain SB210) | |
| 18 | R (Ar) | Ribosomal protein L16 | polymer | 143 | 17462.0 | 1 | UniProt (Q951A0) | Tetrahymena thermophila (strain SB210) | |
| 19 | S (As) | 50S ribosomal protein L17 | polymer | 237 | 27705.2 | 1 | UniProt (A4VE95) Pfam (PF01196) | Tetrahymena thermophila (strain SB210) | |
| 20 | T (At) | bL19m | polymer | 242 | 28828.9 | 1 | UniProt (I7M2I9) | Tetrahymena thermophila (strain SB210) | |
| 21 | U (Au) | 50S ribosomal protein L20 | polymer | 170 | 20232.5 | 1 | UniProt (Q235I3) Pfam (PF00453) | Tetrahymena thermophila (strain SB210) | |
| 22 | V (Av) | 50S ribosomal protein L21 | polymer | 235 | 27633.6 | 1 | UniProt (I7LVD3) Pfam (PF00829) | Tetrahymena thermophila (strain SB210) | |
| 23 | W (Aw) | Ribosomal protein L22/L17e | polymer | 364 | 42829.7 | 1 | UniProt (Q23CT9) Pfam (PF00237) | Tetrahymena thermophila (strain SB210) | |
| 24 | X (Ax) | Ribosomal protein L23, putative | polymer | 138 | 16210.2 | 1 | UniProt (Q22EY1) Pfam (PF00276) | Tetrahymena thermophila (strain SB210) | |
| 25 | Y (Ay) | 50S ribosomal protein L24 | polymer | 234 | 26654.9 | 1 | UniProt (Q24C34) Pfam (PF00467) Pfam (PF17136) | Tetrahymena thermophila (strain SB210) | |
| 26 | Z (Az) | bL25m | polymer | 321 | 37212.1 | 1 | UniProt (I7LVZ3) | Tetrahymena thermophila (strain SB210) | |
| 27 | AA (AA) | 50S ribosomal protein L27 | polymer | 237 | 27380.8 | 1 | UniProt (I7M068) Pfam (PF01016) | Tetrahymena thermophila (strain SB210) | |
| 28 | BA (AB) | Ribosomal protein L28 | polymer | 289 | 35041.2 | 1 | UniProt (I7LU83) Pfam (PF00830) | Tetrahymena thermophila (strain SB210) | |
| 29 | CA (AC) | 39-S ribosomal protein L47 | polymer | 307 | 36608.8 | 1 | UniProt (Q22W36) Pfam (PF06984) | Tetrahymena thermophila (strain SB210) | |
| 30 | DA (AD) | bL32m | polymer | 36 | 3081.8 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 31 | EA (AE) | 50S ribosomal protein L33 | polymer | 64 | 7237.6 | 1 | UniProt (Q22L35) Pfam (PF00471) | Tetrahymena thermophila (strain SB210) | |
| 32 | FA (AF) | bL35m | polymer | 164 | 19551.3 | 1 | UniProt (I7M803) Pfam (PF01632) | Tetrahymena thermophila (strain SB210) | |
| 33 | GA (AG) | Ribosomal protein | polymer | 93 | 11117.2 | 1 | UniProt (W7XH61) Pfam (PF00444) | Tetrahymena thermophila (strain SB210) | |
| 34 | HA (AH) | mL40 | polymer | 199 | 23724.1 | 1 | UniProt (I7LT48) | Tetrahymena thermophila (strain SB210) | |
| 35 | IA (AI) | Ribosomal protein L27 | polymer | 155 | 18506.2 | 1 | UniProt (I7MG40) Pfam (PF09809) | Tetrahymena thermophila (strain SB210) | |
| 36 | JA (AJ) | Ribosomal protein L51/S25/CI-B8 domain protein | polymer | 179 | 21158.3 | 1 | UniProt (Q22RG0) Pfam (PF05047) | Tetrahymena thermophila (strain SB210) | |
| 37 | KA (AK) | mL46 | polymer | 309 | 36856.1 | 1 | UniProt (I7LWM6) | Tetrahymena thermophila (strain SB210) | |
| 38 | LA (AL) | Large subunit ribosomal protein | polymer | 145 | 16831.6 | 1 | UniProt (I7MAF1) Pfam (PF05046) | Tetrahymena thermophila (strain SB210) | |
| 39 | MA (AM) | mL53 | polymer | 184 | 21995.3 | 1 | UniProt (Q22KC0) | Tetrahymena thermophila (strain SB210) | |
| 40 | NA (AN) | mL54 | polymer | 158 | 18240.4 | 1 | UniProt (I7MI39) Pfam (PF08561) | Tetrahymena thermophila (strain SB210) | |
| 41 | OA (AO) | mL64 | polymer | 155 | 18191.2 | 1 | UniProt (Q23ZH7) | Tetrahymena thermophila (strain SB210) | |
| 42 | PA (AP) | mL101 | polymer | 386 | 45713.7 | 1 | UniProt (I7M3V9) | Tetrahymena thermophila (strain SB210) | |
| 43 | QA (AQ) | mL102 | polymer | 109 | 12872.0 | 1 | UniProt (W7WYR3) | Tetrahymena thermophila (strain SB210) | |
| 44 | RA (AR) | mL103 | polymer | 348 | 41557.2 | 1 | UniProt (I7MKV5) | Tetrahymena thermophila (strain SB210) | |
| 45 | SA (AS) | mL104 | polymer | 764 | 90008.9 | 1 | UniProt (I7LTP6) | Tetrahymena thermophila (strain SB210) | |
| 46 | TA (AT) | Signal peptide-binding domain protein | polymer | 299 | 35486.5 | 1 | UniProt (W7XFS0) Pfam (PF02978) | Tetrahymena thermophila (strain SB210) | |
| 47 | UA (AU) | mL106 | polymer | 499 | 57790.4 | 1 | UniProt (Q23Q81) | Tetrahymena thermophila (strain SB210) | |
| 48 | VA (AV) | Iron-binding zinc finger CDGSH type protein | polymer | 160 | 18456.3 | 1 | UniProt (Q22HE3) Pfam (PF09360) | Tetrahymena thermophila (strain SB210) | |
| 49 | WA (Ba) | SSU rRNA_1 | polymer | 196 | 62976.4 | 1 | GenBank (15011465) | Tetrahymena thermophila (strain SB210) | |
| 50 | XA (Bb) | SSU rRNA_2 | polymer | 1395 | 448294.5 | 1 | GenBank (15011465) | Tetrahymena thermophila (strain SB210) | |
| 51 | YA (Bc) | Ymf73 | polymer | 159 | 19461.4 | 1 | UniProt (Q950X8) | Tetrahymena thermophila (strain SB210) | |
| 52 | ZA (Bd) | Ymf64 | polymer | 330 | 40101.9 | 1 | UniProt (Q951A8) | Tetrahymena thermophila (strain SB210) | |
| 53 | AB (Be) | Ymf76 | polymer | 405 | 50832.6 | 1 | UniProt (Q951C0) | Tetrahymena thermophila (strain SB210) | |
| 54 | BB (Bf) | 30S ribosomal protein S5 | polymer | 351 | 40865.6 | 1 | UniProt (I7M4M7) Pfam (PF00333) | Tetrahymena thermophila (strain SB210) | |
| 55 | CB (Bg) | Ribosomal protein S6 | polymer | 141 | 15971.4 | 1 | UniProt (I7MHS2) Pfam (PF01250) | Tetrahymena thermophila (strain SB210) | |
| 56 | DB (Bh) | Ymf63 | polymer | 276 | 33564.4 | 1 | UniProt (Q951A4) | Tetrahymena thermophila (strain SB210) | |
| 57 | EB (Bi) | Ribosomal protein S9 | polymer | 737 | 87307.2 | 1 | UniProt (I7M4A2) Pfam (PF00380) | Tetrahymena thermophila (strain SB210) | |
| 58 | FB (Bj) | Ymf59 | polymer | 152 | 18389.6 | 1 | UniProt (Q951A1) | Tetrahymena thermophila (strain SB210) | |
| 59 | GB (Bk) | Ymf61 | polymer | 238 | 29047.4 | 1 | UniProt (Q950Z8) | Tetrahymena thermophila (strain SB210) | |
| 60 | HB (Bl) | Ribosomal protein S12 | polymer | 133 | 15296.4 | 1 | UniProt (Q951B3) | Tetrahymena thermophila (strain SB210) | |
| 61 | IB (Bm) | Ribosomal protein S13 | polymer | 276 | 33437.2 | 1 | UniProt (Q951B9) | Tetrahymena thermophila (strain SB210) | |
| 62 | JB (Bn) | Ribosomal protein S14 | polymer | 101 | 12311.9 | 1 | UniProt (Q951B0) | Tetrahymena thermophila (strain SB210) | |
| 63 | KB (Bo) | 30S ribosomal protein S15 | polymer | 196 | 23138.9 | 1 | UniProt (Q22WF3) Pfam (PF00312) | Tetrahymena thermophila (strain SB210) | |
| 64 | LB (Bp) | 30S ribosomal protein S16 | polymer | 437 | 52066.6 | 1 | UniProt (I7M3F6) Pfam (PF00886) | Tetrahymena thermophila (strain SB210) | |
| 65 | MB (Bq) | 30S ribosomal protein S17 | polymer | 182 | 21427.8 | 1 | UniProt (I7M6C7) Pfam (PF00366) | Tetrahymena thermophila (strain SB210) | |
| 66 | NB (Br) | Ribosomal protein S18 | polymer | 549 | 63883.3 | 1 | UniProt (Q23K82) Pfam (PF01084) | Tetrahymena thermophila (strain SB210) | |
| 67 | OB (Bs) | Ribosomal protein S19 | polymer | 98 | 11625.0 | 1 | UniProt (Q951B7) | Tetrahymena thermophila (strain SB210) | |
| 68 | PB (Bt) | bS21m | polymer | 102 | 12342.4 | 1 | UniProt (Q22BA0) | Tetrahymena thermophila (strain SB210) | |
| 69 | QB (Bu) | mS23 | polymer | 567 | 63642.8 | 1 | UniProt (Q23YQ0) | Tetrahymena thermophila (strain SB210) | |
| 70 | RB (Bv) | mS26 | polymer | 579 | 69412.8 | 1 | UniProt (I7M0P0) | Tetrahymena thermophila (strain SB210) | |
| 71 | SB (Bw) | Ribosomal death-associated protein | polymer | 703 | 83462.2 | 1 | UniProt (Q22RT0) Pfam (PF10236) | Tetrahymena thermophila (strain SB210) | |
| 72 | TB (Bx) | mS31 | polymer | 719 | 83818.4 | 1 | UniProt (Q23UD3) | Tetrahymena thermophila (strain SB210) | |
| 73 | UB (By) | mS33 | polymer | 132 | 15143.8 | 1 | UniProt (I7LW04) | Tetrahymena thermophila (strain SB210) | |
| 74 | VB (Bz) | mS34 | polymer | 147 | 16757.9 | 1 | UniProt (I7LWU8) | Tetrahymena thermophila (strain SB210) | |
| 75 | WB (BA) | Ribosomal subunit protein | polymer | 149 | 17981.8 | 1 | UniProt (Q23K64) Pfam (PF10213) | Tetrahymena thermophila (strain SB210) | |
| 76 | XB (BB) | mS37 | polymer | 112 | 13504.6 | 1 | UniProt (I7MMM6) | Tetrahymena thermophila (strain SB210) | |
| 77 | YB (BC) | mS38 | polymer | 37 | 3166.9 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 78 | ZB (BD) | IGR motif protein | polymer | 130 | 15207.7 | 1 | UniProt (Q22FZ4) Pfam (PF09597) | Tetrahymena thermophila (strain SB210) | |
| 79 | AC (BE) | mS45 | polymer | 464 | 54964.7 | 1 | UniProt (Q23DN6) | Tetrahymena thermophila (strain SB210) | |
| 80 | BC (BF) | mS75 | polymer | 23 | 1975.4 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 81 | CC (BG) | mS76 | polymer | 182 | 21735.4 | 1 | UniProt (Q24G80) | Tetrahymena thermophila (strain SB210) | |
| 82 | DC (BH) | mS77 | polymer | 63 | 5379.6 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 83 | EC (BI) | Enoyl-CoA hydratase/isomerase | polymer | 1451 | 171474.5 | 1 | UniProt (Q22P47) Pfam (PF16113) | Tetrahymena thermophila (strain SB210) | |
| 84 | FC (BJ) | mS78 | polymer | 1539 | 179260.3 | 1 | UniProt (I7M7B1) | Tetrahymena thermophila (strain SB210) | |
| 85 | GC (BK) | mS79 | polymer | 267 | 30229.2 | 1 | UniProt (Q23DG3) | Tetrahymena thermophila (strain SB210) | |
| 86 | HC (BL) | SelR domain protein | polymer | 310 | 36654.1 | 1 | UniProt (Q22W57) Pfam (PF01641) | Tetrahymena thermophila (strain SB210) | |
| 87 | IC (BM) | mS81 | polymer | 355 | 42317.7 | 1 | UniProt (Q24E31) | Tetrahymena thermophila (strain SB210) | |
| 88 | JC (BN) | mS82 | polymer | 283 | 33603.2 | 1 | UniProt (Q22GF7) | Tetrahymena thermophila (strain SB210) | |
| 89 | KC (BO) | PARP alpha-helical domain-containing protein,mS83 | polymer | 142 | 13272.9 | 1 | UniProt (Q22N51) | Tetrahymena thermophila (strain SB210) | |
| 90 | LC (BP) | mS84,mS84 | polymer | 100 | 10453.4 | 1 | PDB (Q22N51) | Tetrahymena thermophila (strain SB210) | |
| 91 | MC (BQ) | mS85 | polymer | 1032 | 120913.8 | 1 | UniProt (Q22UP3) | Tetrahymena thermophila (strain SB210) | |
| 92 | NC (BR) | Iron donor protein CyaY | polymer | 143 | 16788.0 | 1 | UniProt (Q240K3) Pfam (PF01491) | Tetrahymena thermophila (strain SB210) | |
| 93 | OC (BS) | mS87 | polymer | 1086 | 127224.7 | 1 | UniProt (A4VCP7) | Tetrahymena thermophila (strain SB210) | |
| 94 | PC (BT) | mS88 | polymer | 297 | 25237.9 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 95 | QC (BU) | mS89 | polymer | 439 | 51871.7 | 1 | UniProt (Q22EB6) | Tetrahymena thermophila (strain SB210) | |
| 96 | RC (BV) | mS90 | polymer | 310 | 33264.6 | 1 | UniProt (Q24HL0) | Tetrahymena thermophila (strain SB210) | |
| 97 | SC (BW) | mS91 | polymer | 285 | 24272.8 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 98 | TC (BX) | Ribosomal protein S3 | polymer | 151 | 18509.1 | 1 | UniProt (Q951B8) | Tetrahymena thermophila (strain SB210) | |
| 99 | UC (BY) | mS93 | polymer | 327 | 37252.4 | 1 | UniProt (I7LUK3) Pfam (PF02536) | Tetrahymena thermophila (strain SB210) | |
| 100 | AD, AE, AF, AG, AH... (Aa, Ab, Bb, Bw, Bz...) | MAGNESIUM ION | non-polymer | 24.3 | 393 | Chemie (MG) | |||
| 101 | CS, MO (BL, AG) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 102 | OO, PO (AV) | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
| 103 | ZR (Bw) | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) |
Sequence modifications
Ak: 14 - 116 (UniProt: Q24IM4)
Am: 1 - 157 (UniProt: Q951B5)
AS: 1 - 763 (UniProt: I7LTP6)
Ba: 25 - 209 (GenBank: 15011465)
Bq: 2 - 180 (UniProt: I7M6C7)
Bu: 1 - 288 (UniProt: Q23YQ0)
Bu: 296 - 448 (PDB: 6Z1P)
Bu: 457 - 583 (UniProt: Q23YQ0)
BO: 107 - 142 (UniProt: Q22N51)
BO: 147 - 285 (PDB: 6Z1P)
BP: 1 - 41 (PDB: 6Z1P)
BP: 42 - 100 (PDB: Q22N51)
BV: 79 - 302 (UniProt: Q24HL0)
BV: 313 - 442 (PDB: 6Z1P)
BY: 17 - 80 (PDB: 6Z1P)
BY: 96 - 387 (UniProt: I7LUK3)
| PDB | External Database | Details |
|---|---|---|
| Lys 12 | - | expression tag |
| Unk 13 | - | expression tag |
| Ala 61 | Arg 108 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Unk -8 | - | expression tag |
| Unk -7 | - | expression tag |
| Unk -6 | - | expression tag |
| Unk -5 | - | expression tag |
| Unk -4 | - | expression tag |
| Unk -3 | - | expression tag |
| Unk -2 | - | expression tag |
| Unk -1 | - | expression tag |
| Unk 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Glu 764 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| A 14 | - | expression tag |
| A 15 | - | expression tag |
| A 16 | - | expression tag |
| A 17 | - | expression tag |
| U 18 | - | expression tag |
| A 19 | - | expression tag |
| A 20 | - | expression tag |
| A 21 | - | expression tag |
| A 22 | - | expression tag |
| A 23 | - | expression tag |
| A 24 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Val 181 | - | expression tag |
| Ala 182 | - | expression tag |
| Ala 183 | - | expression tag |
Bu: 296 - 448 (PDB: 6Z1P)
Bu: 457 - 583 (UniProt: Q23YQ0)
BO: 107 - 142 (UniProt: Q22N51)
BO: 147 - 285 (PDB: 6Z1P)
BP: 1 - 41 (PDB: 6Z1P)
BP: 42 - 100 (PDB: Q22N51)
BV: 79 - 302 (UniProt: Q24HL0)
BV: 313 - 442 (PDB: 6Z1P)
BY: 17 - 80 (PDB: 6Z1P)
BY: 96 - 387 (UniProt: I7LUK3)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 99 |
| Total formula weight | 4568065.9 | |
| Non-Polymers* | Number of molecules | 398 |
| Total formula weight | 10541.5 | |
| All* | Total formula weight | 4578607.4 |
