6Z1P
Structure of the mitochondrial ribosome from Tetrahymena thermophila
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | Aa | LSU rRNA_1 | polymer | 278 | 89365.7 | 1 | GenBank (15011465) | Tetrahymena thermophila (strain SB210) | |
| 2 | Ab | LSU rRNA_2 | polymer | 2314 | 743593.4 | 1 | GenBank (15011465) | Tetrahymena thermophila (strain SB210) | |
| 3 | Ac | Ribosomal protein L2 | polymer | 262 | 29974.1 | 1 | UniProt (Q951B6) Pfam (PF03947) In PDB | Tetrahymena thermophila (strain SB210) | |
| 4 | Ad | 50S ribosomal protein L3 | polymer | 439 | 49883.4 | 1 | UniProt (Q22HG3) Pfam (PF00297) In PDB | Tetrahymena thermophila (strain SB210) | |
| 5 | Ae | 50S ribosomal protein L4 | polymer | 358 | 41992.8 | 1 | UniProt (I7MGP2) Pfam (PF00573) In PDB | Tetrahymena thermophila (strain SB210) | |
| 6 | Af | Ymf69 | polymer | 68 | 8389.2 | 1 | UniProt (Q951A2) In PDB | Tetrahymena thermophila (strain SB210) | |
| 7 | Ag | Ymf60 | polymer | 179 | 21681.2 | 1 | UniProt (Q951A9) In PDB | Tetrahymena thermophila (strain SB210) | |
| 8 | Ah | bL7/L12m | polymer | 106 | 9039.1 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 9 | Ai | bL7/12m | polymer | 61 | 5209.4 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 10 | Aj | bL7/12m | polymer | 69 | 5890.3 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 11 | Ak | Ribosomal protein L7/L12 carboxy-terminal domain protein | polymer | 105 | 12385.2 | 1 | UniProt (Q24IM4) In PDB | Tetrahymena thermophila (strain SB210) | |
| 12 | Al | Ribosomal protein L9, amine-terminal domain protein | polymer | 223 | 26227.0 | 1 | UniProt (Q24C33) Pfam (PF01281) In PDB | Tetrahymena thermophila (strain SB210) | |
| 13 | Am | Ymf74 | polymer | 166 | 19964.8 | 1 | UniProt (Q951B5) In PDB | Tetrahymena thermophila (strain SB210) | |
| 14 | An | Ribosomal protein L11, amine-terminal domain protein | polymer | 158 | 17816.1 | 1 | UniProt (W7XH77) Pfam (PF03946) Pfam (PF00298) In PDB | Tetrahymena thermophila (strain SB210) | |
| 15 | Ao | 50S ribosomal protein L13 | polymer | 391 | 45100.3 | 1 | UniProt (W7X626) Pfam (PF00572) In PDB | Tetrahymena thermophila (strain SB210) | |
| 16 | Ap | Ribosomal protein L14 | polymer | 119 | 13612.5 | 1 | UniProt (Q950Y1) Pfam (PF00238) In PDB | Tetrahymena thermophila (strain SB210) | |
| 17 | Aq | Ribosomal protein L15, putative | polymer | 305 | 34669.4 | 1 | UniProt (I7MF78) Pfam (PF00828) In PDB | Tetrahymena thermophila (strain SB210) | |
| 18 | Ar | Ribosomal protein L16 | polymer | 143 | 17462.0 | 1 | UniProt (Q951A0) Pfam (PF00252) In PDB | Tetrahymena thermophila (strain SB210) | |
| 19 | As | 50S ribosomal protein L17 | polymer | 237 | 27705.2 | 1 | UniProt (A4VE95) Pfam (PF01196) In PDB | Tetrahymena thermophila (strain SB210) | |
| 20 | At | bL19m | polymer | 242 | 28828.9 | 1 | UniProt (I7M2I9) In PDB | Tetrahymena thermophila (strain SB210) | |
| 21 | Au | 50S ribosomal protein L20 | polymer | 170 | 20232.5 | 1 | UniProt (Q235I3) Pfam (PF00453) In PDB | Tetrahymena thermophila (strain SB210) | |
| 22 | Av | 50S ribosomal protein L21 | polymer | 235 | 27633.6 | 1 | UniProt (I7LVD3) Pfam (PF00829) In PDB | Tetrahymena thermophila (strain SB210) | |
| 23 | Aw | Ribosomal protein L22/L17e | polymer | 364 | 42829.7 | 1 | UniProt (Q23CT9) Pfam (PF00237) In PDB | Tetrahymena thermophila (strain SB210) | |
| 24 | Ax | Ribosomal protein L23, putative | polymer | 138 | 16210.2 | 1 | UniProt (Q22EY1) Pfam (PF00276) In PDB | Tetrahymena thermophila (strain SB210) | |
| 25 | Ay | 50S ribosomal protein L24 | polymer | 234 | 26654.9 | 1 | UniProt (Q24C34) Pfam (PF00467) Pfam (PF17136) In PDB | Tetrahymena thermophila (strain SB210) | |
| 26 | Az | bL25m | polymer | 321 | 37212.1 | 1 | UniProt (I7LVZ3) In PDB | Tetrahymena thermophila (strain SB210) | |
| 27 | AA | 50S ribosomal protein L27 | polymer | 237 | 27380.8 | 1 | UniProt (I7M068) Pfam (PF01016) In PDB | Tetrahymena thermophila (strain SB210) | |
| 28 | AB | Ribosomal protein L28 | polymer | 289 | 35041.2 | 1 | UniProt (I7LU83) Pfam (PF00830) In PDB | Tetrahymena thermophila (strain SB210) | |
| 29 | AC | 39-S ribosomal protein L47 | polymer | 307 | 36608.8 | 1 | UniProt (Q22W36) Pfam (PF06984) In PDB | Tetrahymena thermophila (strain SB210) | |
| 30 | AD | bL32m | polymer | 36 | 3081.8 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 31 | AE | 50S ribosomal protein L33 | polymer | 64 | 7237.6 | 1 | UniProt (Q22L35) Pfam (PF00471) In PDB | Tetrahymena thermophila (strain SB210) | |
| 32 | AF | bL35m | polymer | 164 | 19551.3 | 1 | UniProt (I7M803) Pfam (PF01632) In PDB | Tetrahymena thermophila (strain SB210) | |
| 33 | AG | Ribosomal protein | polymer | 93 | 11117.2 | 1 | UniProt (W7XH61) Pfam (PF00444) In PDB | Tetrahymena thermophila (strain SB210) | |
| 34 | AH | mL40 | polymer | 199 | 23724.1 | 1 | UniProt (I7LT48) In PDB | Tetrahymena thermophila (strain SB210) | |
| 35 | AI | Ribosomal protein L27 | polymer | 155 | 18506.2 | 1 | UniProt (I7MG40) Pfam (PF09809) In PDB | Tetrahymena thermophila (strain SB210) | |
| 36 | AJ | Ribosomal protein L51/S25/CI-B8 domain protein | polymer | 179 | 21158.3 | 1 | UniProt (Q22RG0) Pfam (PF05047) In PDB | Tetrahymena thermophila (strain SB210) | |
| 37 | AK | mL46 | polymer | 309 | 36856.1 | 1 | UniProt (I7LWM6) In PDB | Tetrahymena thermophila (strain SB210) | |
| 38 | AL | Large subunit ribosomal protein | polymer | 145 | 16831.6 | 1 | UniProt (I7MAF1) Pfam (PF05046) In PDB | Tetrahymena thermophila (strain SB210) | |
| 39 | AM | mL53 | polymer | 184 | 21995.3 | 1 | UniProt (Q22KC0) In PDB | Tetrahymena thermophila (strain SB210) | |
| 40 | AN | mL54 | polymer | 158 | 18240.4 | 1 | UniProt (I7MI39) Pfam (PF08561) In PDB | Tetrahymena thermophila (strain SB210) | |
| 41 | AO | mL64 | polymer | 155 | 18191.2 | 1 | UniProt (Q23ZH7) In PDB | Tetrahymena thermophila (strain SB210) | |
| 42 | AP | mL101 | polymer | 386 | 45713.7 | 1 | UniProt (I7M3V9) In PDB | Tetrahymena thermophila (strain SB210) | |
| 43 | AQ | mL102 | polymer | 109 | 12872.0 | 1 | UniProt (W7WYR3) In PDB | Tetrahymena thermophila (strain SB210) | |
| 44 | AR | mL103 | polymer | 348 | 41557.2 | 1 | UniProt (I7MKV5) In PDB | Tetrahymena thermophila (strain SB210) | |
| 45 | AS | mL104 | polymer | 764 | 90008.9 | 1 | UniProt (I7LTP6) In PDB | Tetrahymena thermophila (strain SB210) | |
| 46 | AT | Signal peptide-binding domain protein | polymer | 299 | 35486.5 | 1 | UniProt (W7XFS0) Pfam (PF02978) In PDB | Tetrahymena thermophila (strain SB210) | |
| 47 | AU | mL106 | polymer | 499 | 57790.4 | 1 | UniProt (Q23Q81) In PDB | Tetrahymena thermophila (strain SB210) | |
| 48 | AV | Iron-binding zinc finger CDGSH type protein | polymer | 160 | 18456.3 | 1 | UniProt (Q22HE3) Pfam (PF09360) In PDB | Tetrahymena thermophila (strain SB210) | |
| 49 | Ba | SSU rRNA_1 | polymer | 196 | 62976.4 | 1 | GenBank (15011465) | Tetrahymena thermophila (strain SB210) | |
| 50 | Bb | SSU rRNA_2 | polymer | 1395 | 448294.5 | 1 | GenBank (15011465) | Tetrahymena thermophila (strain SB210) | |
| 51 | Bc | Ymf73 | polymer | 159 | 19461.4 | 1 | UniProt (Q950X8) In PDB | Tetrahymena thermophila (strain SB210) | |
| 52 | Bd | Ymf64 | polymer | 330 | 40101.9 | 1 | UniProt (Q951A8) In PDB | Tetrahymena thermophila (strain SB210) | |
| 53 | Be | Ymf76 | polymer | 405 | 50832.6 | 1 | UniProt (Q951C0) In PDB | Tetrahymena thermophila (strain SB210) | |
| 54 | Bf | 30S ribosomal protein S5 | polymer | 351 | 40865.6 | 1 | UniProt (I7M4M7) Pfam (PF00333) In PDB | Tetrahymena thermophila (strain SB210) | |
| 55 | Bg | Ribosomal protein S6 | polymer | 141 | 15971.4 | 1 | UniProt (I7MHS2) Pfam (PF01250) In PDB | Tetrahymena thermophila (strain SB210) | |
| 56 | Bh | Ymf63 | polymer | 276 | 33564.4 | 1 | UniProt (Q951A4) In PDB | Tetrahymena thermophila (strain SB210) | |
| 57 | Bi | Ribosomal protein S9 | polymer | 737 | 87307.2 | 1 | UniProt (I7M4A2) Pfam (PF00380) In PDB | Tetrahymena thermophila (strain SB210) | |
| 58 | Bj | Ymf59 | polymer | 152 | 18389.6 | 1 | UniProt (Q951A1) In PDB | Tetrahymena thermophila (strain SB210) | |
| 59 | Bk | Ymf61 | polymer | 238 | 29047.4 | 1 | UniProt (Q950Z8) In PDB | Tetrahymena thermophila (strain SB210) | |
| 60 | Bl | Ribosomal protein S12 | polymer | 133 | 15296.4 | 1 | UniProt (Q951B3) Pfam (PF00164) In PDB | Tetrahymena thermophila (strain SB210) | |
| 61 | Bm | Ribosomal protein S13 | polymer | 276 | 33437.2 | 1 | UniProt (Q951B9) Pfam (PF00416) In PDB | Tetrahymena thermophila (strain SB210) | |
| 62 | Bn | Ribosomal protein S14 | polymer | 101 | 12311.9 | 1 | UniProt (Q951B0) In PDB | Tetrahymena thermophila (strain SB210) | |
| 63 | Bo | 30S ribosomal protein S15 | polymer | 196 | 23138.9 | 1 | UniProt (Q22WF3) Pfam (PF00312) In PDB | Tetrahymena thermophila (strain SB210) | |
| 64 | Bp | 30S ribosomal protein S16 | polymer | 437 | 52066.6 | 1 | UniProt (I7M3F6) Pfam (PF00886) In PDB | Tetrahymena thermophila (strain SB210) | |
| 65 | Bq | 30S ribosomal protein S17 | polymer | 182 | 21427.8 | 1 | UniProt (I7M6C7) Pfam (PF00366) In PDB | Tetrahymena thermophila (strain SB210) | |
| 66 | Br | Ribosomal protein S18 | polymer | 549 | 63883.3 | 1 | UniProt (Q23K82) Pfam (PF01084) In PDB | Tetrahymena thermophila (strain SB210) | |
| 67 | Bs | Ribosomal protein S19 | polymer | 98 | 11625.0 | 1 | UniProt (Q951B7) Pfam (PF00203) In PDB | Tetrahymena thermophila (strain SB210) | |
| 68 | Bt | bS21m | polymer | 102 | 12342.4 | 1 | UniProt (Q22BA0) In PDB | Tetrahymena thermophila (strain SB210) | |
| 69 | Bu | mS23 | polymer | 567 | 63642.8 | 1 | UniProt (Q23YQ0) In PDB | Tetrahymena thermophila (strain SB210) | |
| 70 | Bv | mS26 | polymer | 579 | 69412.8 | 1 | UniProt (I7M0P0) In PDB | Tetrahymena thermophila (strain SB210) | |
| 71 | Bw | Ribosomal death-associated protein | polymer | 703 | 83462.2 | 1 | UniProt (Q22RT0) Pfam (PF10236) In PDB | Tetrahymena thermophila (strain SB210) | |
| 72 | Bx | mS31 | polymer | 719 | 83818.4 | 1 | UniProt (Q23UD3) In PDB | Tetrahymena thermophila (strain SB210) | |
| 73 | By | mS33 | polymer | 132 | 15143.8 | 1 | UniProt (I7LW04) In PDB | Tetrahymena thermophila (strain SB210) | |
| 74 | Bz | mS34 | polymer | 147 | 16757.9 | 1 | UniProt (I7LWU8) In PDB | Tetrahymena thermophila (strain SB210) | |
| 75 | BA | Ribosomal subunit protein | polymer | 149 | 17981.8 | 1 | UniProt (Q23K64) Pfam (PF10213) In PDB | Tetrahymena thermophila (strain SB210) | |
| 76 | BB | mS37 | polymer | 112 | 13504.6 | 1 | UniProt (I7MMM6) In PDB | Tetrahymena thermophila (strain SB210) | |
| 77 | BC | mS38 | polymer | 37 | 3166.9 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 78 | BD | IGR motif protein | polymer | 130 | 15207.7 | 1 | UniProt (Q22FZ4) Pfam (PF09597) In PDB | Tetrahymena thermophila (strain SB210) | |
| 79 | BE | mS45 | polymer | 464 | 54964.7 | 1 | UniProt (Q23DN6) In PDB | Tetrahymena thermophila (strain SB210) | |
| 80 | BF | mS75 | polymer | 23 | 1975.4 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 81 | BG | mS76 | polymer | 182 | 21735.4 | 1 | UniProt (Q24G80) In PDB | Tetrahymena thermophila (strain SB210) | |
| 82 | BH | mS77 | polymer | 63 | 5379.6 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 83 | BI | Enoyl-CoA hydratase/isomerase | polymer | 1451 | 171474.5 | 1 | UniProt (Q22P47) Pfam (PF16113) In PDB | Tetrahymena thermophila (strain SB210) | |
| 84 | BJ | mS78 | polymer | 1539 | 179260.3 | 1 | UniProt (I7M7B1) In PDB | Tetrahymena thermophila (strain SB210) | |
| 85 | BK | mS79 | polymer | 267 | 30229.2 | 1 | UniProt (Q23DG3) In PDB | Tetrahymena thermophila (strain SB210) | |
| 86 | BL | SelR domain protein | polymer | 310 | 36654.1 | 1 | UniProt (Q22W57) Pfam (PF01641) In PDB | Tetrahymena thermophila (strain SB210) | |
| 87 | BM | mS81 | polymer | 355 | 42317.7 | 1 | UniProt (Q24E31) In PDB | Tetrahymena thermophila (strain SB210) | |
| 88 | BN | mS82 | polymer | 283 | 33603.2 | 1 | UniProt (Q22GF7) In PDB | Tetrahymena thermophila (strain SB210) | |
| 89 | BO | PARP alpha-helical domain-containing protein,mS83 | polymer | 142 | 13272.9 | 1 | UniProt (Q22N51) In PDB | Tetrahymena thermophila (strain SB210) | |
| 90 | BP | mS84,mS84 | polymer | 100 | 10453.4 | 1 | PDB (Q22N51) | Tetrahymena thermophila (strain SB210) | |
| 91 | BQ | mS85 | polymer | 1032 | 120913.8 | 1 | UniProt (Q22UP3) In PDB | Tetrahymena thermophila (strain SB210) | |
| 92 | BR | Iron donor protein CyaY | polymer | 143 | 16788.0 | 1 | UniProt (Q240K3) Pfam (PF01491) In PDB | Tetrahymena thermophila (strain SB210) | |
| 93 | BS | mS87 | polymer | 1086 | 127224.7 | 1 | UniProt (A4VCP7) In PDB | Tetrahymena thermophila (strain SB210) | |
| 94 | BT | mS88 | polymer | 297 | 25237.9 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 95 | BU | mS89 | polymer | 439 | 51871.7 | 1 | UniProt (Q22EB6) In PDB | Tetrahymena thermophila (strain SB210) | |
| 96 | BV | mS90 | polymer | 310 | 33264.6 | 1 | UniProt (Q24HL0) In PDB | Tetrahymena thermophila (strain SB210) | |
| 97 | BW | mS91 | polymer | 285 | 24272.8 | 1 | Tetrahymena thermophila (strain SB210) | ||
| 98 | BX | Ribosomal protein S3 | polymer | 151 | 18509.1 | 1 | UniProt (Q951B8) In PDB | Tetrahymena thermophila (strain SB210) | |
| 99 | BY | mS93 | polymer | 327 | 37252.4 | 1 | UniProt (I7LUK3) Pfam (PF02536) In PDB | Tetrahymena thermophila (strain SB210) | |
| 100 | Aa, Ab, Bb, Bw, Bz... | MAGNESIUM ION | non-polymer | 24.3 | 393 | Chemie (MG) | |||
| 101 | BL, AG | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) | |||
| 102 | AV | FE2/S2 (INORGANIC) CLUSTER | non-polymer | 175.8 | 2 | Chemie (FES) | |||
| 103 | Bw | ADENOSINE-5'-TRIPHOSPHATE | non-polymer | 507.2 | 1 | Chemie (ATP) |
Sequence modifications
Ak: 14 - 116 (UniProt: Q24IM4)
Am: 1 - 157 (UniProt: Q951B5)
AS: 1 - 763 (UniProt: I7LTP6)
Ba: 25 - 209 (GenBank: 15011465)
Bq: 2 - 180 (UniProt: I7M6C7)
Bu: 1 - 288 (UniProt: Q23YQ0)
Bu: 296 - 448 (PDB: 6Z1P)
Bu: 457 - 583 (UniProt: Q23YQ0)
BO: 107 - 142 (UniProt: Q22N51)
BO: 147 - 285 (PDB: 6Z1P)
BP: 1 - 41 (PDB: 6Z1P)
BP: 42 - 100 (PDB: Q22N51)
BV: 79 - 302 (UniProt: Q24HL0)
BV: 313 - 442 (PDB: 6Z1P)
BY: 17 - 80 (PDB: 6Z1P)
BY: 96 - 387 (UniProt: I7LUK3)
| PDB | External Database | Details |
|---|---|---|
| Lys 12 | - | expression tag |
| Unk 13 | - | expression tag |
| Ala 61 | Arg 108 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Unk -8 | - | expression tag |
| Unk -7 | - | expression tag |
| Unk -6 | - | expression tag |
| Unk -5 | - | expression tag |
| Unk -4 | - | expression tag |
| Unk -3 | - | expression tag |
| Unk -2 | - | expression tag |
| Unk -1 | - | expression tag |
| Unk 0 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Glu 764 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| A 14 | - | expression tag |
| A 15 | - | expression tag |
| A 16 | - | expression tag |
| A 17 | - | expression tag |
| U 18 | - | expression tag |
| A 19 | - | expression tag |
| A 20 | - | expression tag |
| A 21 | - | expression tag |
| A 22 | - | expression tag |
| A 23 | - | expression tag |
| A 24 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Val 181 | - | expression tag |
| Ala 182 | - | expression tag |
| Ala 183 | - | expression tag |
Bu: 296 - 448 (PDB: 6Z1P)
Bu: 457 - 583 (UniProt: Q23YQ0)
BO: 107 - 142 (UniProt: Q22N51)
BO: 147 - 285 (PDB: 6Z1P)
BP: 1 - 41 (PDB: 6Z1P)
BP: 42 - 100 (PDB: Q22N51)
BV: 79 - 302 (UniProt: Q24HL0)
BV: 313 - 442 (PDB: 6Z1P)
BY: 17 - 80 (PDB: 6Z1P)
BY: 96 - 387 (UniProt: I7LUK3)
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 99 |
| Total formula weight | 4568065.9 | |
| Non-Polymers* | Number of molecules | 398 |
| Total formula weight | 10541.5 | |
| All* | Total formula weight | 4578607.4 |
