6YZ5
H11-D4 complex with SARS-CoV-2 RBD
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | E | Spike glycoprotein | polymer | 210 | 23716.6 | 1 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
| 2 | F | Nanobody H11-D4 | polymer | 134 | 15010.7 | 1 | Lama glama (llama) | ||
| 3 | E | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 4 | E, F | 1,2-ETHANEDIOL | non-polymer | 62.1 | 12 | Chemie (EDO) | |||
| 5 | E, F | ACETATE ION | non-polymer | 59.0 | 4 | Chemie (ACT) | |||
| 6 | water | water | 18.0 | 241 | Chemie (HOH) |
Sequence modifications
E: 330 - 532 (UniProt: P0DTC2)
| PDB | External Database | Details |
|---|---|---|
| Lys 533 | - | expression tag |
| His 534 | - | expression tag |
| His 535 | - | expression tag |
| His 536 | - | expression tag |
| His 537 | - | expression tag |
| His 538 | - | expression tag |
| His 539 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 38727.3 | |
| Non-Polymers* | Number of molecules | 17 |
| Total formula weight | 1202.2 | |
| All* | Total formula weight | 39929.5 |
