6YWV
The structure of the Atp25 bound assembly intermediate of the mitoribosome from Neurospora crassa
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | 23 S rRNA | polymer | 3464 | 1114857.4 | 1 | Neurospora crassa OR74A | ||
| 2 | B (B) | 60S ribosomal protein L2 | polymer | 383 | 42260.8 | 1 | UniProt (Q7SCX7) Pfam (PF00181) Pfam (PF03947) | Neurospora crassa OR74A | |
| 3 | C (C) | 60S ribosomal protein L3 | polymer | 384 | 41262.5 | 1 | UniProt (Q1K8T6) Pfam (PF00297) | Neurospora crassa OR74A | |
| 4 | D (D) | 60S ribosomal protein L4, variant | polymer | 325 | 36402.8 | 1 | UniProt (V5IMN1) Pfam (PF00573) | Neurospora crassa OR74A | |
| 5 | E (E) | 50S ribosomal protein L5 | polymer | 352 | 39170.9 | 1 | UniProt (Q1K6P0) Pfam (PF00673) | Neurospora crassa OR74A | |
| 6 | F (F) | 60S ribosomal protein L6 | polymer | 255 | 28629.2 | 1 | UniProt (Q7RZF0) Pfam (PF00347) | Neurospora crassa OR74A | |
| 7 | G (f) | Uncharacterized protein | polymer | 347 | 37363.8 | 1 | UniProt (Q7RZ62) | Neurospora crassa OR74A | |
| 8 | H (g) | 60S ribosomal protein L19 | polymer | 158 | 16629.4 | 1 | UniProt (Q7RX40) Pfam (PF03946) Pfam (PF00298) | Neurospora crassa OR74A | |
| 9 | I (H) | Ribosomal protein L13 | polymer | 183 | 20334.6 | 1 | UniProt (Q7SBV6) Pfam (PF00572) | Neurospora crassa OR74A | |
| 10 | J (I) | 50S ribosomal protein L14 | polymer | 131 | 14135.6 | 1 | UniProt (Q7SBJ8) Pfam (PF00238) | Neurospora crassa OR74A | |
| 11 | K (J) | 50S ribosomal subunit protein L15 | polymer | 312 | 33951.1 | 1 | UniProt (Q7SB98) Pfam (PF00828) | Neurospora crassa OR74A | |
| 12 | L (K) | 60S ribosomal protein L16 | polymer | 249 | 27443.8 | 1 | UniProt (F5HIJ5) Pfam (PF00252) | Neurospora crassa OR74A | |
| 13 | M (L) | 50S ribosomal protein L17 | polymer | 193 | 22181.5 | 1 | UniProt (Q1K8C8) Pfam (PF01196) | Neurospora crassa OR74A | |
| 14 | N (M) | Mitochondrial ribosomal protein | polymer | 258 | 28235.3 | 1 | UniProt (Q7RYW8) Pfam (PF01245) | Neurospora crassa OR74A | |
| 15 | O (N) | Aconitate hydratase | polymer | 217 | 23953.0 | 1 | UniProt (Q7SGE5) Pfam (PF00829) | Neurospora crassa OR74A | |
| 16 | P (O) | Mitochondrial large ribosomal subunit | polymer | 364 | 41566.0 | 1 | UniProt (Q7S5N0) Pfam (PF00237) | Neurospora crassa OR74A | |
| 17 | Q (P) | Mitochondrial ribosomal protein subunit L23 | polymer | 228 | 26005.5 | 1 | UniProt (Q7SA60) Pfam (PF00276) | Neurospora crassa OR74A | |
| 18 | R (Q) | KOW domain-containing protein | polymer | 396 | 45460.1 | 1 | UniProt (Q7RXU7) Pfam (PF22682) | Neurospora crassa OR74A | |
| 19 | S (R) | Uncharacterized protein | polymer | 447 | 49549.2 | 1 | UniProt (Q1K730) Pfam (PF01016) | Neurospora crassa OR74A | |
| 20 | T (S) | 50S ribosomal protein L24 | polymer | 274 | 31501.1 | 1 | UniProt (Q7SC44) Pfam (PF00830) | Neurospora crassa OR74A | |
| 21 | U (T) | 54S ribosomal protein L4, mitochondrial | polymer | 263 | 29645.3 | 1 | UniProt (Q7S910) Pfam (PF06984) | Neurospora crassa OR74A | |
| 22 | V (U) | 50S ribosomal protein L30 | polymer | 161 | 18196.4 | 1 | UniProt (Q1K8Y7) Pfam (PF00327) | Neurospora crassa OR74A | |
| 23 | W (V) | Uncharacterized protein | polymer | 219 | 23766.7 | 1 | UniProt (Q1K7L7) Pfam (PF21492) | Neurospora crassa OR74A | |
| 24 | X (W) | Mitochondrial ribosomal protein subunit L32 | polymer | 129 | 14114.8 | 1 | UniProt (Q1K4P1) Pfam (PF01783) | Neurospora crassa OR74A | |
| 25 | Y (X) | Uncharacterized protein | polymer | 59 | 7027.6 | 1 | UniProt (V5IM60) Pfam (PF00471) | Neurospora crassa OR74A | |
| 26 | Z (Y) | Uncharacterized protein | polymer | 140 | 14853.3 | 1 | UniProt (Q1K7P9) Pfam (PF00468) | Neurospora crassa OR74A | |
| 27 | AA (0) | Ribosomal protein | polymer | 124 | 13960.4 | 1 | UniProt (Q7S4E7) Pfam (PF00444) | Neurospora crassa OR74A | |
| 28 | BA (1) | Mitochondrial large ribosomal subunit YmL35 | polymer | 449 | 50749.2 | 1 | UniProt (Q7RXV8) Pfam (PF01161) | Neurospora crassa OR74A | |
| 29 | CA (2) | Uncharacterized protein | polymer | 370 | 41496.3 | 1 | UniProt (A0A0B0DWX0) | Neurospora crassa OR74A | |
| 30 | DA (3) | Uncharacterized protein | polymer | 103 | 11796.6 | 1 | UniProt (Q7S5W0) Pfam (PF09809) | Neurospora crassa OR74A | |
| 31 | EA (4) | Mitochondrial ribosomal protein L43 | polymer | 138 | 15126.7 | 1 | UniProt (Q7S300) Pfam (PF05047) | Neurospora crassa OR74A | |
| 32 | FA (5) | 60S ribosomal protein L3 | polymer | 439 | 48106.5 | 1 | UniProt (Q7SA88) Pfam (PF22892) | Neurospora crassa OR74A | |
| 33 | GA (6) | 50S ribosomal subunit L30 | polymer | 368 | 41322.1 | 1 | UniProt (Q7S1Z3) Pfam (PF11788) | Neurospora crassa OR74A | |
| 34 | HA (7) | Uncharacterized protein | polymer | 165 | 18180.7 | 1 | UniProt (Q7S518) Pfam (PF05046) | Neurospora crassa OR74A | |
| 35 | IA (8) | Uncharacterized protein | polymer | 443 | 49748.5 | 1 | UniProt (Q7S711) Pfam (PF10501) | Neurospora crassa OR74A | |
| 36 | JA (h) | Mitochondrial ribosomal protein L44 | polymer | 98 | 11128.8 | 1 | UniProt (Q7SGH0) Pfam (PF10780) | Neurospora crassa OR74A | |
| 37 | KA (i) | Uncharacterized protein | polymer | 218 | 23179.6 | 1 | UniProt (Q7SCZ3) Pfam (PF08561) | Neurospora crassa OR74A | |
| 38 | LA (9) | RNase III domain-containing protein | polymer | 267 | 29625.2 | 1 | UniProt (Q7S1R6) Pfam (PF14622) | Neurospora crassa OR74A | |
| 39 | MA (a) | 60S ribosomal protein L20 | polymer | 225 | 25439.0 | 1 | UniProt (Q1K6U7) Pfam (PF12824) | Neurospora crassa OR74A | |
| 40 | NA (b) | Mitochondrial 60S ribosomal protein L25 | polymer | 162 | 18745.0 | 1 | UniProt (Q7SEK9) Pfam (PF18126) | Neurospora crassa OR74A | |
| 41 | OA (c) | 54S ribosomal protein L31, mitochondrial | polymer | 110 | 13131.5 | 1 | UniProt (U9W8F2) Pfam (PF09784) | Neurospora crassa OR74A | |
| 42 | PA (d) | Uncharacterized protein | polymer | 292 | 32516.1 | 1 | UniProt (Q7RYM5) Pfam (PF12829) | Neurospora crassa OR74A | |
| 43 | QA (n) | ATPase synthesis protein 25, mitochondrial | polymer | 699 | 77985.4 | 1 | UniProt (Q7SAC2) | Neurospora crassa OR74A | |
| 44 | AB, AC, AD, AE, AF... (A, K, c) | MAGNESIUM ION | non-polymer | 24.3 | 144 | Chemie (MG) | |||
| 45 | TE (A) | NICOTINAMIDE-ADENINE-DINUCLEOTIDE | non-polymer | 663.4 | 1 | Chemie (NAD) | |||
| 46 | EG (A) | SPERMINE | non-polymer | 202.3 | 1 | Chemie (SPM) | |||
| 47 | AH, BH, FG, GG, HG... (A) | POTASSIUM ION | non-polymer | 39.1 | 23 | Chemie (K) | |||
| 48 | DH, EH (W, 0) | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 43 |
| Total formula weight | 2350735.3 | |
| Non-Polymers* | Number of molecules | 171 |
| Total formula weight | 5395.8 | |
| All* | Total formula weight | 2356131.0 |
