6YRQ
Crystal structure of the tetramerization domain of the glycoprotein Gn (Andes virus) at pH 4.6
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D | Envelope polyprotein | polymer | 149 | 15940.0 | 4 | UniProt (Q9E006) Pfam (PF20679) In PDB | Andes orthohantavirus | M polyprotein |
| 2 | E, F, G, H | RNA (5'-R(*AP*UP*UP*UP*A)-3') | polymer | 5 | 1532.0 | 4 | Drosophila melanogaster (fruit fly) | ||
| 3 | I | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 1 | In PDB GlyTouCan (G42666HT) | |||
| 4 | J | beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 1 | In PDB GlyTouCan (G15407YE) | |||
| 5 | A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 1 | Chemie (NAG) | |||
| 6 | A, B, C, D | (4S)-2-METHYL-2,4-PENTANEDIOL | non-polymer | 118.2 | 4 | Chemie (MPD) | |||
| 7 | water | water | 18.0 | 137 | Chemie (HOH) |
Sequence modifications
A, B, C, D: 375 - 484 (UniProt: Q9E006)
| PDB | External Database | Details |
|---|---|---|
| Gly 485 | - | expression tag |
| Pro 486 | - | expression tag |
| Phe 487 | - | expression tag |
| Glu 488 | - | expression tag |
| Asp 489 | - | expression tag |
| Asp 490 | - | expression tag |
| Asp 491 | - | expression tag |
| Asp 492 | - | expression tag |
| Lys 493 | - | expression tag |
| Ala 494 | - | expression tag |
| Gly 495 | - | expression tag |
| Trp 496 | - | expression tag |
| Ser 497 | - | expression tag |
| His 498 | - | expression tag |
| Pro 499 | - | expression tag |
| Gln 500 | - | expression tag |
| Phe 501 | - | expression tag |
| Glu 502 | - | expression tag |
| Lys 503 | - | expression tag |
| Gly 504 | - | expression tag |
| Gly 505 | - | expression tag |
| Gly 506 | - | expression tag |
| Ser 507 | - | expression tag |
| Gly 508 | - | expression tag |
| Gly 509 | - | expression tag |
| Gly 510 | - | expression tag |
| Ser 511 | - | expression tag |
| Gly 512 | - | expression tag |
| Gly 513 | - | expression tag |
| Gly 514 | - | expression tag |
| Ser 515 | - | expression tag |
| Trp 516 | - | expression tag |
| Ser 517 | - | expression tag |
| His 518 | - | expression tag |
| Pro 519 | - | expression tag |
| Gln 520 | - | expression tag |
| Phe 521 | - | expression tag |
| Glu 522 | - | expression tag |
| Lys 523 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 8 |
| Total formula weight | 69887.7 | |
| Branched | Number of molecules | 2 |
| Total formula weight | 1010.9 | |
| Non-Polymers* | Number of molecules | 5 |
| Total formula weight | 693.9 | |
| All* | Total formula weight | 71592.6 |
