6YP7
PSII-LHCII C2S2 supercomplex from Pisum sativum grown in high light conditions
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B, C, D, E... (g, n, y, G, N...) | Chlorophyll a-b binding protein 8, chloroplastic | polymer | 219 | 23573.5 | 6 | UniProt (P27490) | Pisum sativum (Pea) | LHCII type I CAB-8 |
| 2 | G, X (a, A) | Photosystem II protein D1 | polymer | 334 | 36972.1 | 2 | UniProt (P06585) | Pisum sativum (Pea) | PSII D1 protein,32 kDa thylakoid membrane protein,Photosystem II Q(B) protein |
| 3 | H, Y (b, B) | Photosystem II CP47 reaction center protein | polymer | 503 | 55659.2 | 2 | UniProt (Q9XQR6) | Pisum sativum (Pea) | PSII 47 kDa protein,Protein CP-47 |
| 4 | I, Z (c, C) | Photosystem II CP43 reaction center protein | polymer | 450 | 49275.4 | 2 | UniProt (P06004) | Pisum sativum (Pea) | PSII 43 kDa protein,Photosystem II 44 kDa chlorophyll apoprotein,Protein CP-43 |
| 5 | AA, J (d, D) | Photosystem II D2 protein | polymer | 341 | 38220.6 | 2 | UniProt (P06006) | Pisum sativum (Pea) | PSII D2 protein,Photosystem Q(A) protein |
| 6 | BA, K (e, E) | Cytochrome b559 subunit alpha | polymer | 75 | 8624.7 | 2 | UniProt (P13554) | Pisum sativum (Pea) | PSII reaction center subunit V |
| 7 | CA, L (f, F) | Cytochrome b559 subunit beta | polymer | 30 | 3396.0 | 2 | UniProt (P62096) | Pisum sativum (Pea) | PSII reaction center subunit VI |
| 8 | DA, M (h, H) | Photosystem II reaction center protein H | polymer | 60 | 6455.6 | 2 | UniProt (Q9XQR3) | Pisum sativum (Pea) | PSII-H,Photosystem II 10 kDa phosphoprotein,Photosystem II 9 kDa phosphoprotein |
| 9 | EA, N (i, I) | Photosystem II reaction center protein I | polymer | 34 | 3926.7 | 2 | UniProt (D5MAJ9) | Pisum sativum (Pea) | PSII-I,PSII 4.8 kDa protein |
| 10 | FA, O (j, J) | Photosystem II reaction center protein J | polymer | 35 | 3598.3 | 2 | UniProt (P13555) | Pisum sativum (Pea) | PSII-J |
| 11 | GA, P (k, K) | Photosystem II reaction center protein K | polymer | 37 | 4287.2 | 2 | UniProt (D5MAJ8) | Pisum sativum (Pea) | PSII-K |
| 12 | HA, Q (l, L) | Photosystem II reaction center protein L | polymer | 37 | 4366.9 | 2 | UniProt (P60147) | Pisum sativum (Pea) | PSII-L |
| 13 | IA, R (m, M) | Photosystem II reaction center protein M | polymer | 33 | 3641.4 | 2 | UniProt (P69529) | Pisum sativum (Pea) | PSII-M |
| 14 | JA, S (o, O) | Oxygen-evolving enhancer protein 1, chloroplastic | polymer | 248 | 26554.6 | 2 | UniProt (P14226) | Pisum sativum (Pea) | OEE1,33 kDa subunit of oxygen evolving system of photosystem II,33 kDa thylakoid membrane protein,OEC 33 kDa subunit |
| 15 | KA, T (t, T) | Photosystem II reaction center protein T | polymer | 32 | 3692.5 | 2 | UniProt (Q8HS25) | Pisum sativum (Pea) | PSII-T |
| 16 | LA, U (w, W) | Photosystem II reaction center protein W | polymer | 54 | 5914.6 | 2 | UniProt (A0A2D0TCJ2) | Pisum sativum (Pea) | Photosystem II reaction center protein W,PSBW |
| 17 | MA, V (x, X) | Ultraviolet-B-repressible protein | polymer | 39 | 3929.6 | 2 | UniProt (Q8VYY1) | Pisum sativum (Pea) | |
| 18 | NA, W (z, Z) | Photosystem II reaction center protein Z | polymer | 62 | 6555.7 | 2 | UniProt (Q32902) | Pisum sativum (Pea) | PSII-Z |
| 19 | OA, RA (r, R) | Light harvesting chlorophyll a/b-binding protein Lhcb4.3 | polymer | 222 | 24460.9 | 2 | Pisum sativum (Pea) | ||
| 20 | PA, QA (s, S) | Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26 | polymer | 218 | 23839.1 | 2 | UniProt (by SIFTS) (A0A2D0TCJ1) | Pisum sativum (Pea) | |
| 21 | AB, AD, BD, BL, CC... (g, G, r, y, Y...) | CHLOROPHYLL B | non-polymer | 907.5 | 48 | Chemie (CHL) | |||
| 22 | AF, AI, AL, AM, AN... (a, A, W, s, R...) | CHLOROPHYLL A | non-polymer | 893.5 | 150 | Chemie (CLA) | |||
| 23 | AE, DN, GB, HB, ID... (N, R, g, G, r...) | (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 568.9 | 12 | Chemie (LUT) PubChem (24728610) PubChem (177565809) PubChem (25202165) PubChem (177696530) PubChem (44481270) PubChem (46835684) PubChem (25245095) PubChem (53477744) PubChem (53477774) PubChem (181579) PubChem (441664) PubChem (53477760) PubChem (57922343) PubChem (31380) PubChem (90820720) PubChem (448437) PubChem (89305995) PubChem (91240120) PubChem (91519940) PubChem (91007743) PubChem (91330154) PubChem (91467158) PubChem (5281243) PubChem (93535598) PubChem (94424894) PubChem (100935514) PubChem (101351907) PubChem (101351906) PubChem (5368396) PubChem (6325550) PubChem (6433159) PubChem (93971688) PubChem (93971689) PubChem (93971690) PubChem (93971691) PubChem (94424892) PubChem (94424893) PubChem (131801656) PubChem (101351905) PubChem (101351908) PubChem (101351909) PubChem (101351910) PubChem (101727094) PubChem (102093134) PubChem (102514741) PubChem (12085680) PubChem (10210008) PubChem (10257404) PubChem (139335388) PubChem (12359017) PubChem (16061195) PubChem (16061196) PubChem (16061204) PubChem (162679657) PubChem (162945700) PubChem (162945708) PubChem (125183271) PubChem (125183272) PubChem (125183273) PubChem (125183613) PubChem (125183614) PubChem (126970006) PubChem (175679236) PubChem (175679086) PubChem (131801655) PubChem (139595700) PubChem (152743345) PubChem (156583347) PubChem (159139983) PubChem (162945701) PubChem (162945702) PubChem (162945703) PubChem (162945704) PubChem (162945705) PubChem (162945706) PubChem (162945707) PubChem (162945709) PubChem (169423521) PubChem (169954357) PubChem (172748694) | |||
| 24 | BE, EN, IB, KD, OL... (N, R, g, G, r...) | (3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL | non-polymer | 600.9 | 8 | Chemie (XAT) PubChem (24970201) PubChem (46936684) PubChem (53477762) PubChem (179930) PubChem (51346155) PubChem (448438) PubChem (92096) PubChem (5282218) PubChem (5315242) PubChem (98049827) PubChem (101341889) PubChem (101341891) PubChem (6852159) PubChem (126456015) PubChem (6384269) PubChem (6442428) PubChem (98049828) PubChem (101341888) PubChem (101341890) PubChem (101341892) PubChem (101341893) PubChem (101341894) PubChem (101341895) PubChem (9851662) PubChem (12358664) PubChem (12358665) PubChem (12358669) PubChem (155293357) PubChem (162964874) PubChem (163187351) PubChem (125183415) PubChem (125183416) PubChem (125183417) PubChem (177696491) PubChem (129888894) PubChem (137331554) PubChem (152743429) PubChem (162964869) PubChem (162964870) PubChem (162964871) PubChem (162964872) PubChem (162964873) PubChem (162964875) PubChem (162964876) PubChem (163186889) PubChem (169544055) PubChem (171036315) PubChem (172817291) | |||
| 25 | AC, CE, JB, PL, RC... (n, N, g, r, y...) | (1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL | non-polymer | 600.9 | 7 | Chemie (NEX) PubChem (177697037) PubChem (21158515) PubChem (52948899) PubChem (4481261) PubChem (5282217) PubChem (159749) PubChem (5320120) PubChem (5281247) PubChem (101866355) PubChem (6384259) PubChem (101052392) PubChem (101866356) PubChem (101866357) PubChem (102060371) PubChem (10908146) PubChem (12358959) PubChem (162910894) PubChem (162910891) PubChem (162910895) PubChem (139033583) PubChem (162910892) PubChem (162910893) PubChem (162910896) PubChem (169502056) PubChem (172012198) | |||
| 26 | AG, BC, CJ, CL, DE... (b, n, B, r, N...) | 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE | non-polymer | 723.0 | 26 | Chemie (LHG) PubChem (46936292) PubChem (446440) PubChem (73416066) PubChem (65144) PubChem (9547104) PubChem (13305396) PubChem (11846227) PubChem (138986743) | |||
| 27 | VE, WH (a, A) | CA-MN4-O5 CLUSTER | non-polymer | 339.8 | 2 | Chemie (OEX) | |||
| 28 | WE, XH (a, A) | FE (II) ION | non-polymer | 55.8 | 2 | Chemie (FE2) PubChem (27284) | |||
| 29 | CG, EJ, XE, YH (c, C, a, A) | CHLORIDE ION | non-polymer | 35.5 | 4 | Chemie (CL) PubChem (312) | |||
| 30 | BF, BK, CI, ZG (a, D, A, d) | PHEOPHYTIN A | non-polymer | 871.2 | 4 | Chemie (PHO) | |||
| 31 | AJ, BJ, DF, DH, EI... (B, a, d, A, D...) | BETA-CAROTENE | non-polymer | 536.9 | 22 | Chemie (BCR) PubChem (573) PubChem (21672398) PubChem (176490061) PubChem (177696266) PubChem (46783370) PubChem (46846294) PubChem (54603957) PubChem (54612003) PubChem (86765360) PubChem (5315709) PubChem (5280489) PubChem (91827292) PubChem (92863345) PubChem (5353436) PubChem (5356616) PubChem (5927371) PubChem (124919640) PubChem (92863346) PubChem (92863347) PubChem (92863348) PubChem (6477957) PubChem (100990628) PubChem (101525094) PubChem (101525095) PubChem (9828626) PubChem (10256668) PubChem (12305639) PubChem (12305640) PubChem (12305642) PubChem (12305644) PubChem (12305647) PubChem (12305652) PubChem (146673260) PubChem (152743364) PubChem (124919639) PubChem (160505766) PubChem (129651951) PubChem (132274419) PubChem (145925599) PubChem (159562859) PubChem (172654026) PubChem (172878405) PubChem (173398668) | |||
| 32 | EF, EH, FI, HK (a, d, A, D) | 2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE | non-polymer | 749.2 | 4 | Chemie (PL9) PubChem (23304240) PubChem (20286) PubChem (21881166) PubChem (5375177) PubChem (6323474) PubChem (6325820) PubChem (6433402) | |||
| 33 | AH, CK, FF, GI, PH... (d, D, a, A, l...) | 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL | non-polymer | 795.1 | 8 | Chemie (SQD) PubChem (25147486) PubChem (25235342) PubChem (42607399) PubChem (159321) PubChem (481096) PubChem (5459390) PubChem (102201395) PubChem (134765349) PubChem (9810997) PubChem (9918745) PubChem (10219110) PubChem (10373133) PubChem (14463145) | |||
| 34 | DK, GF (D, a) | BICARBONATE ION | non-polymer | 61.0 | 2 | Chemie (BCT) PubChem (769) | |||
| 35 | HF, LH, OK, QK, SG... (a, h, H, J, c...) | DIGALACTOSYL DIACYL GLYCEROL (DGDG) | non-polymer | 949.3 | 10 | Chemie (DGD) PubChem (24865462) PubChem (24865463) PubChem (50904896) PubChem (53480668) PubChem (46936671) PubChem (448441) PubChem (447899) PubChem (4629344) PubChem (15991538) PubChem (154573294) PubChem (171123158) PubChem (134746152) PubChem (140529801) | |||
| 36 | AK, BG, DJ, FJ, HI... (C, b, B, d, D...) | 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE | non-polymer | 787.2 | 14 | Chemie (LMG) | |||
| 37 | JH, MK (f, F) | PROTOPORPHYRIN IX CONTAINING FE | non-polymer | 616.5 | 2 | Chemie (HEM) |
Sequence modifications
f, F: 10 - 39 (UniProt: P62096)
| PDB | External Database | Details |
|---|---|---|
| Phe 26 | Ser 26 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 44 |
| Total formula weight | 768183.3 | |
| Non-Polymers* | Number of molecules | 325 |
| Total formula weight | 259673.8 | |
| All* | Total formula weight | 1027857.1 |
