6YP7

PSII-LHCII C2S2 supercomplex from Pisum sativum grown in high light conditions

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	g, n, y, G, N...	Chlorophyll a-b binding protein 8, chloroplastic	polymer	219	23573.5	6	UniProt (P27490) Pfam (PF00504) In PDB	Pisum sativum (Pea)	LHCII type I CAB-8
2	a, A	Photosystem II protein D1	polymer	334	36972.1	2	UniProt (P06585) Pfam (PF00124) In PDB	Pisum sativum (Pea)	PSII D1 protein,32 kDa thylakoid membrane protein,Photosystem II Q(B) protein
3	b, B	Photosystem II CP47 reaction center protein	polymer	503	55659.2	2	UniProt (Q9XQR6) Pfam (PF00421) In PDB	Pisum sativum (Pea)	PSII 47 kDa protein,Protein CP-47
4	c, C	Photosystem II CP43 reaction center protein	polymer	450	49275.4	2	UniProt (P06004) Pfam (PF00421) In PDB	Pisum sativum (Pea)	PSII 43 kDa protein,Photosystem II 44 kDa chlorophyll apoprotein,Protein CP-43
5	d, D	Photosystem II D2 protein	polymer	341	38220.6	2	UniProt (P06006) Pfam (PF00124) In PDB	Pisum sativum (Pea)	PSII D2 protein,Photosystem Q(A) protein
6	e, E	Cytochrome b559 subunit alpha	polymer	75	8624.7	2	UniProt (P13554) Pfam (PF00283) Pfam (PF00284) In PDB	Pisum sativum (Pea)	PSII reaction center subunit V
7	f, F	Cytochrome b559 subunit beta	polymer	30	3396.0	2	UniProt (P62096) Pfam (PF00283) In PDB	Pisum sativum (Pea)	PSII reaction center subunit VI
8	h, H	Photosystem II reaction center protein H	polymer	60	6455.6	2	UniProt (Q9XQR3) Pfam (PF00737) In PDB	Pisum sativum (Pea)	PSII-H,Photosystem II 10 kDa phosphoprotein,Photosystem II 9 kDa phosphoprotein
9	i, I	Photosystem II reaction center protein I	polymer	34	3926.7	2	UniProt (D5MAJ9) Pfam (PF02532) In PDB	Pisum sativum (Pea)	PSII-I,PSII 4.8 kDa protein
10	j, J	Photosystem II reaction center protein J	polymer	35	3598.3	2	UniProt (P13555) Pfam (PF01788) In PDB	Pisum sativum (Pea)	PSII-J
11	k, K	Photosystem II reaction center protein K	polymer	37	4287.2	2	UniProt (D5MAJ8) Pfam (PF02533) In PDB	Pisum sativum (Pea)	PSII-K
12	l, L	Photosystem II reaction center protein L	polymer	37	4366.9	2	UniProt (P60147) Pfam (PF02419) In PDB	Pisum sativum (Pea)	PSII-L
13	m, M	Photosystem II reaction center protein M	polymer	33	3641.4	2	UniProt (P69529) Pfam (PF05151) In PDB	Pisum sativum (Pea)	PSII-M
14	o, O	Oxygen-evolving enhancer protein 1, chloroplastic	polymer	248	26554.6	2	UniProt (P14226) Pfam (PF01716) In PDB	Pisum sativum (Pea)	OEE1,33 kDa subunit of oxygen evolving system of photosystem II,33 kDa thylakoid membrane protein,OEC 33 kDa subunit
15	t, T	Photosystem II reaction center protein T	polymer	32	3692.5	2	UniProt (Q8HS25) Pfam (PF01405) In PDB	Pisum sativum (Pea)	PSII-T
16	w, W	Photosystem II reaction center protein W	polymer	54	5914.6	2	UniProt (A0A2D0TCJ2) Pfam (PF07123) In PDB	Pisum sativum (Pea)	Photosystem II reaction center protein W,PSBW
17	x, X	Ultraviolet-B-repressible protein	polymer	39	3929.6	2	UniProt (Q8VYY1) Pfam (PF06596) In PDB	Pisum sativum (Pea)
18	z, Z	Photosystem II reaction center protein Z	polymer	62	6555.7	2	UniProt (Q32902) Pfam (PF01737) In PDB	Pisum sativum (Pea)	PSII-Z
19	r, R	Light harvesting chlorophyll a/b-binding protein Lhcb4.3	polymer	222	24460.9	2		Pisum sativum (Pea)
20	s, S	Light harvesting chlorophyll a/b-binding protein Lhcb5, CP26	polymer	218	23839.1	2	Pfam (PF00504) UniProt (by SIFTS) (A0A2D0TCJ1) In PDB	Pisum sativum (Pea)
21	g, G, r, y, Y...	CHLOROPHYLL B	non-polymer		907.5	48	Chemie (CHL)
22	a, A, W, s, R...	CHLOROPHYLL A	non-polymer		893.5	150	Chemie (CLA)
23	N, R, g, G, r...	(3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		568.9	12	Chemie (LUT)
24	N, R, g, G, r...	(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL	non-polymer		600.9	8	Chemie (XAT)
25	n, N, g, r, y...	(1R,3R)-6-{(3E,5E,7E,9E,11E,13E,15E,17E)-18-[(1S,4R,6R)-4-HYDROXY-2,2,6-TRIMETHYL-7-OXABICYCLO[4.1.0]HEPT-1-YL]-3,7,12,16-TETRAMETHYLOCTADECA-1,3,5,7,9,11,13,15,17-NONAENYLIDENE}-1,5,5-TRIMETHYLCYCLOHEXANE-1,3-DIOL	non-polymer		600.9	7	Chemie (NEX)
26	b, n, B, r, N...	1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE	non-polymer		723.0	26	Chemie (LHG)
27	a, A	CA-MN4-O5 CLUSTER	non-polymer		339.8	2	Chemie (OEX)
28	a, A	FE (II) ION	non-polymer		55.8	2	Chemie (FE2)
29	c, C, a, A	CHLORIDE ION	non-polymer		35.5	4	Chemie (CL)
30	a, D, A, d	PHEOPHYTIN A	non-polymer		871.2	4	Chemie (PHO)
31	B, a, d, A, D...	BETA-CAROTENE	non-polymer		536.9	22	Chemie (BCR)
32	a, d, A, D	2,3-DIMETHYL-5-(3,7,11,15,19,23,27,31,35-NONAMETHYL-2,6,10,14,18,22,26,30,34-HEXATRIACONTANONAENYL-2,5-CYCLOHEXADIENE-1,4-DIONE-2,3-DIMETHYL-5-SOLANESYL-1,4-BENZOQUINONE	non-polymer		749.2	4	Chemie (PL9)
33	d, D, a, A, l...	1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL	non-polymer		795.1	8	Chemie (SQD)
34	D, a	BICARBONATE ION	non-polymer		61.0	2	Chemie (BCT)
35	a, h, H, J, c...	DIGALACTOSYL DIACYL GLYCEROL (DGDG)	non-polymer		949.3	10	Chemie (DGD)
36	C, b, B, d, D...	1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE	non-polymer		787.2	14	Chemie (LMG)
37	f, F	PROTOPORPHYRIN IX CONTAINING FE	non-polymer		616.5	2	Chemie (HEM)

Sequence modifications

f, F: 10 - 39 (UniProt: P62096)

PDB	External Database	Details
Phe 26	Ser 26	conflict

Contents of the asymmetric unit

Polymers	Number of chains	44
	Total formula weight	768183.3
Non-Polymers*	Number of molecules	325
	Total formula weight	259673.8
All*	Total formula weight	1027857.1

*Water molecules are not included.