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6YLY

pre-60S State NE2 (TAP-Flag-Nop53)

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
60S ribosomal protein L2-Apolymer25427463.61UniProt (P0CX45)
Pfam (PF00181)
Pfam (PF03947)
Saccharomyces cerevisiae (Baker's yeast)L5,Large ribosomal subunit protein uL2-A,RP8,YL6
2B
(a)
60S ribosomal protein L28polymer14916761.71UniProt (P02406)
Pfam (PF00828)
Saccharomyces cerevisiae (Baker's yeast)L27a,L29,Large ribosomal subunit protein uL15,RP44,RP62,YL24
3C
(B)
60S ribosomal protein L3polymer38743850.81UniProt (P14126)
Pfam (PF00297)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL3,Maintenance of killer protein 8,RP1,Trichodermin resistance protein,YL1
4D
(b)
Nucleolar GTP-binding protein 1polymer64774531.21UniProt (Q02892)
Pfam (PF17835)
Pfam (PF06858)
Pfam (PF08155)
Saccharomyces cerevisiae (Baker's yeast)
5E
(C)
60S ribosomal protein L4-Apolymer36239159.11UniProt (P10664)
Pfam (PF00573)
Pfam (PF14374)
Saccharomyces cerevisiae (Baker's yeast)L2,Large ribosomal subunit protein uL4-A,RP2,YL2
6F
(c)
60S ribosomal protein L30polymer10511430.41UniProt (P14120)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)L32,Large ribosomal subunit protein eL30,RP73,YL38
7G
(d)
60S ribosomal protein L31-Apolymer11312980.21UniProt (P0C2H8)
Pfam (PF01198)
Saccharomyces cerevisiae (Baker's yeast)L34,Large ribosomal subunit protein eL31-A,YL28
8H
(E)
60S ribosomal protein L6-Apolymer17620000.61UniProt (Q02326)
Pfam (PF01159)
Saccharomyces cerevisiae (Baker's yeast)L17,Large ribosomal subunit protein eL6-A,RP18,YL16
9I
(e)
60S ribosomal protein L32polymer13014809.41UniProt (P38061)
Pfam (PF01655)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL32
10J
(F)
60S ribosomal protein L7-Apolymer24427686.31UniProt (P05737)
Pfam (PF08079)
Pfam (PF00327)
Saccharomyces cerevisiae (Baker's yeast)L6,Large ribosomal subunit protein uL30-A,RP11,YL8
11K
(f)
60S ribosomal protein L33-Apolymer10712177.11UniProt (P05744)
Pfam (PF01247)
Saccharomyces cerevisiae (Baker's yeast)L37,Large ribosomal subunit protein eL33-A,RP47,YL37
12L
(G)
60S ribosomal protein L8-Apolymer25628175.81UniProt (P17076)
Pfam (PF01248)
Saccharomyces cerevisiae (Baker's yeast)L4,L4-2,L7a-1,Large ribosomal subunit protein eL8-A,Maintenance of killer protein 7,RP6,YL5
13M
(g)
60S ribosomal protein L34-Apolymer12113673.21UniProt (P87262)
Pfam (PF01199)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL34-A
14N
(I)
Bud site selection protein 20polymer16618547.01UniProt (Q08004)
Pfam (PF12171)
Saccharomyces cerevisiae (Baker's yeast)
15O
(H)
60S ribosomal protein L9-Apolymer19121605.11UniProt (P05738)
Pfam (PF00347)
Saccharomyces cerevisiae (Baker's yeast)L8,Large ribosomal subunit protein uL6-A,RP24,YL11
16P
(h)
60S ribosomal protein L35-Apolymer12013942.61UniProt (P0CX84)
Pfam (PF00831)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL29-A
17Q
(i)
60S ribosomal protein L36-Apolymer10011151.31UniProt (P05745)
Pfam (PF01158)
Saccharomyces cerevisiae (Baker's yeast)L39,Large ribosomal subunit protein eL36-A,YL39
18R
(j)
60S ribosomal protein L37-Apolymer889877.41UniProt (P49166)
Pfam (PF01907)
Saccharomyces cerevisiae (Baker's yeast)L43,Large ribosomal subunit protein eL37-A,YL35,YP55
19S
(k)
60S ribosomal protein L38polymer788845.61UniProt (P49167)
Pfam (PF01781)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL38
20T
(L)
60S ribosomal protein L13-Apolymer19922604.21UniProt (Q12690)
Pfam (PF01294)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL13-A
21U
(l)
60S ribosomal protein L39polymer516358.61UniProt (P04650)
Pfam (PF00832)
Saccharomyces cerevisiae (Baker's yeast)L46,Large ribosomal subunit protein eL39,YL40
22V
(M)
60S ribosomal protein L14-Apolymer13815195.11UniProt (P36105)
Pfam (PF00467)
Pfam (PF01929)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL14-A
23W
(p)
60S ribosomal protein L43-Apolymer9210113.01UniProt (P0CX25)
Pfam (PF01780)
Saccharomyces cerevisiae (Baker's yeast)L37a,Large ribosomal subunit protein eL43-A,YL35
24X
(N)
60S ribosomal protein L15-Apolymer20424482.41UniProt (P05748)
Pfam (PF00827)
Saccharomyces cerevisiae (Baker's yeast)L13,Large ribosomal subunit protein eL15-A,RP15R,YL10,YP18
25Y
(u)
Ribosome biogenesis protein RLP24polymer19924027.71UniProt (Q07915)
Pfam (PF01246)
Saccharomyces cerevisiae (Baker's yeast)Ribosomal protein L24-like
26Z
(O)
60S ribosomal protein L16-Apolymer19922247.21UniProt (P26784)
Pfam (PF00572)
Saccharomyces cerevisiae (Baker's yeast)L13a,L21,Large ribosomal subunit protein uL13-A,RP22,YL15
27AA
(P)
60S ribosomal protein L17-Apolymer18420589.51UniProt (P05740)
Pfam (PF00237)
Saccharomyces cerevisiae (Baker's yeast)L20A,Large ribosomal subunit protein uL22-A,YL17
28BA
(Q)
60S ribosomal protein L18-Apolymer18620609.31UniProt (P0CX49)
Pfam (PF17135)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL18-A,RP28
29CA
(R)
60S ribosomal protein L19-Apolymer18921762.31UniProt (P0CX82)
Pfam (PF01280)
Saccharomyces cerevisiae (Baker's yeast)L23,Large ribosomal subunit protein eL19-A,RP15L,RP33,YL14
30DA
(r)
Ribosome biogenesis protein NSA2polymer26129786.81UniProt (A6ZR80)
Pfam (PF01201)
UniProt (by SIFTS) (P40078)
Saccharomyces cerevisiae (Baker's yeast)NOP7-associated protein 2
31EA
(S)
60S ribosomal protein L20-Apolymer17220478.91UniProt (P0CX23)
Pfam (PF01775)
Saccharomyces cerevisiae (Baker's yeast)L18a,Large ribosomal subunit protein eL20-A
32FA
(T)
60S ribosomal protein L21-Apolymer16018279.31UniProt (Q02753)
Pfam (PF01157)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL21-A
33GA
(U)
60S ribosomal protein L22-Apolymer12113711.41UniProt (P05749)
Pfam (PF01776)
Saccharomyces cerevisiae (Baker's yeast)L1c,Large ribosomal subunit protein eL22-A,RP4,YL31
34HA
(V)
60S ribosomal protein L23-Apolymer13714494.01UniProt (P0CX41)
Pfam (PF00238)
Saccharomyces cerevisiae (Baker's yeast)L17a,Large ribosomal subunit protein uL14-A,YL32
35IA
(W)
Ribosome assembly factor MRT4polymer23627098.01UniProt (P33201)
Pfam (PF00466)
Pfam (PF17777)
Saccharomyces cerevisiae (Baker's yeast)mRNA turnover protein 4
36JA
(X)
60S ribosomal protein L25polymer14215787.61UniProt (P04456)
Pfam (PF03939)
Pfam (PF00276)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein uL23,RP16L,YL25,YP42'
37KA
(Y)
60S ribosomal protein L26-Apolymer12714265.81UniProt (P05743)
Pfam (PF16906)
Pfam (PF00467)
Saccharomyces cerevisiae (Baker's yeast)L33,Large ribosomal subunit protein uL24-A,YL33
38LA
(y)
Eukaryotic translation initiation factor 6polymer24526476.61UniProt (Q12522)
Pfam (PF01912)
Saccharomyces cerevisiae (Baker's yeast)eIF-6
39MA
(Z)
60S ribosomal protein L27-Apolymer13615568.41UniProt (P0C2H6)
Pfam (PF01777)
Saccharomyces cerevisiae (Baker's yeast)Large ribosomal subunit protein eL27-A
40NA
(z)
UPF0642 protein YBL028Cpolymer10612435.41UniProt (P38202)
Pfam (PF10338)
Saccharomyces cerevisiae (Baker's yeast)
41OA
(1)
25S rRNApolymer33961097493.91GenBank (834774822)Saccharomyces cerevisiae (Baker's yeast)
42PA
(3)
5.8S rRNApolymer15850682.91GenBank (1331532632)Saccharomyces cerevisiae (Baker's yeast)
43QA
(K)
Proteasome-interacting protein CIC1polymer37642596.71UniProt (P38779)
Pfam (PF00687)
Saccharomyces cerevisiae (Baker's yeast)Core interacting component 1
44RA
(n)
Pescadillo homologpolymer60569984.11UniProt (A6ZV85)
Pfam (PF06732)
Pfam (PF16589)
UniProt (by SIFTS) (P53261)
Saccharomyces cerevisiae (Baker's yeast)Nucleolar protein 7,Ribosomal RNA-processing protein 13
45SA
(o)
Ribosome biogenesis protein 15polymer22025499.21UniProt (P53927)
Pfam (PF00076)
Saccharomyces cerevisiae (Baker's yeast)Nucleolar protein 15
46TA
(q)
Ribosome biogenesis protein NOP53polymer45552667.81UniProt (Q12080)
Pfam (PF07767)
Saccharomyces cerevisiae (Baker's yeast)Nucleolar protein 53
47UA
(t)
Ribosome biogenesis protein RLP7polymer32236621.11UniProt (P40693)
Pfam (PF00327)
Saccharomyces cerevisiae (Baker's yeast)Ribosomal protein L7-like
48VA
(6)
ITS2polymer23274308.41GenBank (1102641490)Saccharomyces cerevisiae (Baker's yeast)
49WA
(s)
Nuclear GTP-binding protein NUG1polymer52057798.71UniProt (P40010)
Pfam (PF08701)
Pfam (PF01926)
Saccharomyces cerevisiae (Baker's yeast)Nuclear GTPase 1
50XA, YA, ZA
(j, p, u)
ZINC IONnon-polymer65.43Chemie (ZN)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains49
Total formula weight2330692.2
Non-Polymers*Number of molecules3
Total formula weight196.2
All*Total formula weight2330888.4
*Water molecules are not included.

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PDB entries from 2025-06-11

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