6YLA
Crystal structure of the SARS-CoV-2 receptor binding domain in complex with CR3022 Fab
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | E, A | Spike glycoprotein | polymer | 213 | 24003.8 | 2 | UniProt (P0DTC2) Pfam (PF09408) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
2 | H, B | Heavy Chain | polymer | 229 | 24455.5 | 2 | Homo sapiens (Human) | ||
3 | L, C | Light chain | polymer | 220 | 24289.9 | 2 | Homo sapiens (Human) | ||
4 | A, B, E, C, H... | DIMETHYL SULFOXIDE | non-polymer | 78.1 | 14 | Chemie (DMS) | |||
5 | B, E, C, H | MALONATE ION | non-polymer | 102.0 | 12 | Chemie (MLI) | |||
6 | E, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
7 | C, L | PENTAETHYLENE GLYCOL | non-polymer | 238.3 | 2 | Chemie (1PE) | |||
8 | A | 2-(2-METHOXYETHOXY)ETHANOL | non-polymer | 120.1 | 1 | Chemie (PG0) | |||
9 | water | water | 18.0 | 52 | Chemie (HOH) |
Sequence modifications
E, A: 330 - 532 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Glu 327 | - | expression tag |
Thr 328 | - | expression tag |
Gly 329 | - | expression tag |
Lys 533 | - | expression tag |
His 534 | - | expression tag |
His 535 | - | expression tag |
His 536 | - | expression tag |
His 537 | - | expression tag |
His 538 | - | expression tag |
His 539 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 6 |
Total formula weight | 145498.5 | |
Non-Polymers* | Number of molecules | 32 |
Total formula weight | 3578.7 | |
All* | Total formula weight | 149077.2 |