6YJT
Crystal structure of MGAT5 (alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase V) luminal domain with a Lys329-Ile345 loop truncation, in complex with UDP
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | AAA, BBB | Alpha-1,6-mannosylglycoprotein 6-beta-N-acetylglucosaminyltransferase A | polymer | 515 | 58996.9 | 2 | UniProt (Q09328) Pfam (PF15024) In PDB | Homo sapiens (Human) | Alpha-mannoside beta-1,6-N-acetylglucosaminyltransferase V,GlcNAc-T V,GNT-V,Mannoside acetylglucosaminyltransferase 5,N-acetylglucosaminyl-transferase V |
2 | AAA, BBB | URIDINE-5'-DIPHOSPHATE | non-polymer | 404.2 | 2 | Chemie (UDP) | |||
3 | AAA, BBB | 1,2-ETHANEDIOL | non-polymer | 62.1 | 8 | Chemie (EDO) | |||
4 | AAA, BBB | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 2 | Chemie (NAG) | |||
5 | AAA, BBB | SULFATE ION | non-polymer | 96.1 | 6 | Chemie (SO4) | |||
6 | water | water | 18.0 | 330 | Chemie (HOH) |
Sequence modifications
AAA, BBB: 214 - 728 (UniProt: Q09328)
PDB | External Database | Details |
---|---|---|
- | Lys 329 | deletion |
- | Lys 330 | deletion |
- | Val 331 | deletion |
- | Val 332 | deletion |
- | Gly 333 | deletion |
- | Asn 334 | deletion |
- | Arg 335 | deletion |
- | Ser 336 | deletion |
- | Gly 337 | deletion |
- | Cys 338 | deletion |
- | Pro 339 | deletion |
- | Thr 340 | deletion |
- | Val 341 | deletion |
Gly 330 | Asp 343 | conflict |
Gly 331 | Arg 344 | conflict |
Gly 332 | Ile 345 | conflict |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 2 |
Total formula weight | 117993.8 | |
Non-Polymers* | Number of molecules | 18 |
Total formula weight | 2323.7 | |
All* | Total formula weight | 120317.5 |