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6YHG

Thrombin in complex with D-Phe-Pro-m-methoxybenzylamide derivative (16a)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(L)
Prothrombinpolymer364096.51UniProt (P00734)
Pfam (PF09396)
Homo sapiens (Human)Coagulation factor II
2B
(H)
Prothrombinpolymer25929780.21UniProt (P00734)
Pfam (PF00089)
Homo sapiens (Human)Coagulation factor II
3C
(I)
Hirudin variant-2polymer121548.61UniProt (P09945)Hirudo medicinalis
4D
(H)
PHOSPHATE IONnon-polymer95.01Chemie (PO4)
5E, F
(H)
SODIUM IONnon-polymer23.02Chemie (NA)
6G
(H)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.21Chemie (NAG)
7H
(H)
GLYCEROLnon-polymer92.11Chemie (GOL)
8I
(H)
D-PHENYLALANINEnon-polymer165.21Chemie (DPN)
9J
(H)
PROLINEnon-polymer115.11Chemie (PRO)
10K
(H)
1-(3-methoxyphenyl)methanaminenon-polymer137.21Chemie (SZ4)
11L, M, N
(L, H, I)
waterwater18.0297Chemie (HOH)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains3
Total formula weight35425.3
Non-Polymers*Number of molecules8
Total formula weight871.8
All*Total formula weight36297.1
*Water molecules are not included.

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PDB entries from 2025-06-18

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