6YDP
55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST)
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (B0) | Mitochondrial ribosomal protein L27 | polymer | 148 | 15943.7 | 1 | UniProt (F1RT79) Pfam (PF01016) UniProt (by SIFTS) (A0A4X1U0F6) | Sus scrofa (Pig) | |
| 2 | B (BU) | Mitochondrial ribosomal protein L20 | polymer | 149 | 17554.8 | 1 | UniProt (A0A286ZU56) Pfam (PF00453) | Sus scrofa (Pig) | |
| 3 | C (BV) | Mitochondrial ribosomal protein L21 | polymer | 209 | 23154.9 | 1 | UniProt (F1RY70) Pfam (PF00829) | Sus scrofa (Pig) | |
| 4 | D (BW) | uL22m | polymer | 210 | 24313.4 | 1 | UniProt (F1RQC9) Pfam (PF00237) UniProt (by SIFTS) (A0A4X1TXR4) | Sus scrofa (Pig) | |
| 5 | E (BX) | uL23m | polymer | 150 | 17643.2 | 1 | UniProt (A0A286ZZC6) | Sus scrofa (Pig) | |
| 6 | F (BY) | uL24m | polymer | 216 | 24893.5 | 1 | UniProt (F1RHJ1) Pfam (PF00467) Pfam (PF17136) | Sus scrofa (Pig) | |
| 7 | G (Ba) | Mitochondrial ribosomal protein L37 | polymer | 423 | 47918.0 | 1 | UniProt (A0A287BIV6) Pfam (PF07147) | Sus scrofa (Pig) | |
| 8 | H (Bb) | Mitochondrial ribosomal protein L38 | polymer | 380 | 44656.4 | 1 | UniProt (F1RW03) Pfam (PF01161) | Sus scrofa (Pig) | |
| 9 | I (Bc) | Mitochondrial ribosomal protein L39 | polymer | 334 | 38523.4 | 1 | UniProt (F1SHP6) | Sus scrofa (Pig) | |
| 10 | J (Bd) | Uncharacterized protein | polymer | 206 | 24075.7 | 1 | UniProt (A0A286ZP98) Pfam (PF09812) | Sus scrofa (Pig) | |
| 11 | K (Be) | Mitochondrial ribosomal protein L41 | polymer | 135 | 15073.4 | 1 | UniProt (A0A287AWS0) Pfam (PF09809) UniProt (by SIFTS) (A0A8D1F1K9) | Sus scrofa (Pig) | |
| 12 | L (Bf) | mL42 | polymer | 142 | 16680.2 | 1 | UniProt (A0A287BQA1) Pfam (PF10210) | Sus scrofa (Pig) | |
| 13 | M (Bg) | Mitochondrial ribosomal protein L43 | polymer | 159 | 17728.1 | 1 | UniProt (F1S8U4) Pfam (PF05047) | Sus scrofa (Pig) | |
| 14 | N (Bh) | mL44 | polymer | 332 | 37527.2 | 1 | UniProt (F1SR64) Pfam (PF22935) Pfam (PF22892) | Sus scrofa (Pig) | |
| 15 | O (Bi) | Mitochondrial ribosomal protein L45 | polymer | 306 | 35331.8 | 1 | UniProt (I3LGM5) Pfam (PF04280) | Sus scrofa (Pig) | |
| 16 | P (Bj) | Mitochondrial ribosomal protein L46 | polymer | 279 | 32216.0 | 1 | UniProt (F1SRT0) Pfam (PF11788) | Sus scrofa (Pig) | |
| 17 | Q (Bk) | 39S ribosomal protein L48, mitochondrial | polymer | 269 | 29942.5 | 1 | UniProt (A0A480J9Z6) Pfam (PF00338) | Sus scrofa (Pig) | 39S ribosomal protein L48,mitochondrial isoform 1,Mitochondrial ribosomal protein L48 |
| 18 | R (Bl) | Mrpl34 | polymer | 166 | 18957.8 | 1 | UniProt (A0A0R4J8D6) Pfam (PF05046) | Sus scrofa (Pig) | |
| 19 | S (Bm) | Mitochondrial ribosomal protein L50 | polymer | 198 | 22785.4 | 1 | UniProt (I3L9H6) Pfam (PF10501) | Sus scrofa (Pig) | |
| 20 | T (Bn) | Mitochondrial ribosomal protein L51 | polymer | 128 | 15249.0 | 1 | UniProt (A0A287BE26) Pfam (PF10244) UniProt (by SIFTS) (A0A8D1P1C8) | Sus scrofa (Pig) | |
| 21 | U (Bo) | mL52 | polymer | 124 | 13813.7 | 1 | UniProt (F1S9B7) Pfam (PF18699) | Sus scrofa (Pig) | |
| 22 | V (Bp) | mL53 | polymer | 112 | 12015.7 | 1 | Sus scrofa (Pig) | ||
| 23 | W (Bq) | mL54 | polymer | 138 | 15957.4 | 1 | UniProt (I3LN63) Pfam (PF08561) | Sus scrofa (Pig) | |
| 24 | X (Bt) | Mitochondrial ribosomal protein L57 | polymer | 102 | 12001.9 | 1 | UniProt (A0A287BP93) Pfam (PF14978) | Sus scrofa (Pig) | |
| 25 | Y (Bu) | mL62 (ICT1) | polymer | 205 | 23545.9 | 1 | UniProt (A0A286ZJR2) Pfam (PF00472) | Sus scrofa (Pig) | |
| 26 | Z (Bv) | mL64 | polymer | 222 | 25815.0 | 1 | UniProt (A0A286ZXA6) Pfam (PF10147) | Sus scrofa (Pig) | |
| 27 | AA (Bw) | 39S ribosomal protein S30, mitochondrial | polymer | 433 | 49100.5 | 1 | UniProt (A0A480QIM3) Pfam (PF07147) | Sus scrofa (Pig) | Mitochondrial ribosomal protein S30 |
| 28 | BA (B1) | Mitochondrial ribosomal protein L28 | polymer | 256 | 30149.0 | 1 | UniProt (A0A286ZTW8) Pfam (PF00830) | Sus scrofa (Pig) | |
| 29 | CA (Bx) | Mitochondrial ribosomal protein S18A | polymer | 196 | 22273.1 | 1 | UniProt (F1RRH6) Pfam (PF01084) | Sus scrofa (Pig) | |
| 30 | AC, DA (AA, BA) | 12S rRNA | polymer | 16770 | 5350865.0 | 2 | Sus scrofa (Pig) | ||
| 31 | EA (AB) | Mitochondrial ribosomal protein S2 | polymer | 289 | 31731.6 | 1 | UniProt (F1S001) Pfam (PF00318) | Sus scrofa (Pig) | |
| 32 | FA (AC) | Mitochondrial ribosomal protein S24 | polymer | 167 | 18935.2 | 1 | UniProt (A0A287ANU4) Pfam (PF14955) | Sus scrofa (Pig) | |
| 33 | GA (AE) | Mitochondrial ribosomal protein S5 | polymer | 430 | 48213.1 | 1 | UniProt (F1SU66) Pfam (PF21251) Pfam (PF00333) Pfam (PF03719) | Sus scrofa (Pig) | |
| 34 | HA (AF) | bS6m | polymer | 276 | 30365.3 | 1 | UniProt (I3LEJ9) | Sus scrofa (Pig) | |
| 35 | IA (AG) | Mitochondrial ribosomal protein S7 | polymer | 242 | 28150.9 | 1 | UniProt (A0A286ZJ25) Pfam (PF00177) | Sus scrofa (Pig) | |
| 36 | JA (AI) | uS9m | polymer | 397 | 45604.6 | 1 | UniProt (I3LU08) Pfam (PF00380) | Sus scrofa (Pig) | |
| 37 | KA (AJ) | Mitochondrial ribosomal protein S10 | polymer | 200 | 23105.7 | 1 | UniProt (F1RUU2) Pfam (PF00338) | Sus scrofa (Pig) | |
| 38 | LA (AK) | uS11m | polymer | 196 | 20841.9 | 1 | UniProt (A0A286ZJJ6) Pfam (PF00411) | Sus scrofa (Pig) | |
| 39 | MA (AL) | Mitochondrial ribosomal protein S12 | polymer | 139 | 15257.1 | 1 | UniProt (A0A0M3KL52) Pfam (PF00164) | Sus scrofa (Pig) | Mitoribosomal protein us12m,mrps12 |
| 40 | NA (AN) | Mitochondrial ribosomal protein S14 | polymer | 128 | 15120.7 | 1 | UniProt (A0A0M3KL53) Pfam (PF00253) | Sus scrofa (Pig) | Mitoribosomal protein us14m,mrps14 |
| 41 | OA (AO) | uS15m | polymer | 239 | 27411.4 | 1 | UniProt (A0A287BMP0) Pfam (PF00312) | Sus scrofa (Pig) | |
| 42 | PA (AP) | 28S ribosomal protein S16, mitochondrial | polymer | 135 | 15182.7 | 1 | UniProt (A0A480JTD7) Pfam (PF00886) | Sus scrofa (Pig) | Mitochondrial ribosomal protein S16 |
| 43 | QA (AQ) | uS17m | polymer | 130 | 14452.0 | 1 | UniProt (F1RIU0) Pfam (PF00366) UniProt (by SIFTS) (A0A8D1UDM1) | Sus scrofa (Pig) | |
| 44 | RA (AR) | Mitochondrial ribosomal protein S18C | polymer | 143 | 16211.1 | 1 | UniProt (A0A0M3KL54) Pfam (PF01084) | Sus scrofa (Pig) | Mitoribosomal protein bs18m,mrps18c |
| 45 | SA (AU) | bS21m | polymer | 87 | 10682.5 | 1 | UniProt (A0A286ZNB3) Pfam (PF01165) | Sus scrofa (Pig) | |
| 46 | TA (AV) | fMet-tRNAMet (P site) | polymer | 71 | 22664.5 | 1 | GenBank (1208989970) | Homo sapiens | |
| 47 | UA (AX) | mRNA | polymer | 6 | 1892.2 | 1 | Homo sapiens | ||
| 48 | VA (AZ) | unknown peptide | polymer | 18 | 1297.4 | 1 | Sus scrofa (Pig) | ||
| 49 | WA (Aa) | Mitochondrial ribosomal protein S22 | polymer | 382 | 43234.6 | 1 | UniProt (A0A287AQT5) Pfam (PF10245) | Sus scrofa (Pig) | |
| 50 | XA (Ab) | mS23 | polymer | 190 | 21666.7 | 1 | UniProt (A0A287AEW3) Pfam (PF10484) | Sus scrofa (Pig) | |
| 51 | YA (Ac) | Mitochondrial ribosomal protein S25 | polymer | 173 | 19954.2 | 1 | UniProt (A0A0M3KL55) Pfam (PF05047) | Sus scrofa (Pig) | Mitoribosomal protein ms25,mrps25 |
| 52 | ZA (Ad) | Mitochondrial ribosomal protein S26 | polymer | 205 | 23637.9 | 1 | UniProt (A0A287AY01) | Sus scrofa (Pig) | |
| 53 | AB (Ae) | Mitochondrial ribosomal protein S27 | polymer | 426 | 49015.6 | 1 | UniProt (I3LK09) Pfam (PF10037) | Sus scrofa (Pig) | |
| 54 | BB (Af) | Mitoribosomal protein ms28, mrps28 | polymer | 188 | 21014.9 | 1 | UniProt (A0A0M3KL56) Pfam (PF10246) | Sus scrofa (Pig) | |
| 55 | CB (B2) | Mitochondrial ribosomal protein L47 | polymer | 252 | 30085.1 | 1 | UniProt (F1SGC7) Pfam (PF06984) | Sus scrofa (Pig) | |
| 56 | DB (Ag) | Death associated protein 3 | polymer | 410 | 46966.1 | 1 | UniProt (I3LS10) Pfam (PF10236) UniProt (by SIFTS) (A0A8D1XNL0) | Sus scrofa (Pig) | |
| 57 | EB (Ah) | Mitochondrial ribosomal protein S31 | polymer | 387 | 44092.0 | 1 | UniProt (F1RME2) Pfam (PF15433) | Sus scrofa (Pig) | |
| 58 | FB (Ai) | mS33 | polymer | 106 | 12544.6 | 1 | UniProt (F1S8G3) Pfam (PF08293) UniProt (by SIFTS) (A0A4X1V2H3) | Sus scrofa (Pig) | |
| 59 | GB (Aj) | mS34 | polymer | 218 | 25843.8 | 1 | UniProt (A0A287AVS9) Pfam (PF16053) | Sus scrofa (Pig) | |
| 60 | HB (Ak) | Mitochondrial ribosomal protein S35 | polymer | 325 | 37104.8 | 1 | UniProt (F1SG95) Pfam (PF10213) | Sus scrofa (Pig) | |
| 61 | IB (Am) | mS37 | polymer | 118 | 13561.9 | 1 | UniProt (F1SU49) Pfam (PF06747) UniProt (by SIFTS) (A0A4X1SZV4) | Sus scrofa (Pig) | |
| 62 | JB (An) | Aurora kinase A interacting protein 1 | polymer | 199 | 22843.9 | 1 | UniProt (A0A287B3R8) Pfam (PF08213) UniProt (by SIFTS) (A0A8D2A802) | Sus scrofa (Pig) | |
| 63 | KB (Ao) | Pentatricopeptide repeat domain 3 | polymer | 699 | 79343.1 | 1 | UniProt (K7GKS8) Pfam (PF13812) Pfam (PF22330) | Sus scrofa (Pig) | |
| 64 | LB (Ap) | 28S ribosomal protein S18b, mitochondrial | polymer | 258 | 29220.5 | 1 | UniProt (Q767K8) Pfam (PF01084) | Sus scrofa (Pig) | S18mt-b,28S ribosomal protein S18-2,mitochondrial,MRP-S18-2 |
| 65 | MB, NB, OB, PB, QB... (CL, DL, EL, FL, GL...) | Mitochondrial ribosomal protein L12 | polymer | 198 | 21269.0 | 7 | UniProt (A0A287ARV8) Pfam (PF16320) Pfam (PF00542) UniProt (by SIFTS) (A0A4X1U6S6) | Sus scrofa (Pig) | |
| 66 | TB (B3) | uL30m | polymer | 161 | 18921.1 | 1 | UniProt (F1STE5) Pfam (PF00327) UniProt (by SIFTS) (A0A8D1MIP3) | Sus scrofa (Pig) | |
| 67 | UB (B4) | bL31m | polymer | 126 | 15156.5 | 1 | UniProt (I3L9J0) Pfam (PF09776) UniProt (by SIFTS) (A0A4X1ULI6) | Sus scrofa (Pig) | |
| 68 | VB (B5) | bL32m | polymer | 188 | 21537.9 | 1 | UniProt (I3LTC4) Pfam (PF01783) | Sus scrofa (Pig) | |
| 69 | WB (B6) | bL33m | polymer | 65 | 7508.1 | 1 | UniProt (A0A286ZU68) Pfam (PF00471) UniProt (by SIFTS) (A0A4X1TLP9) | Sus scrofa (Pig) | |
| 70 | XB (B7) | Mitochondrial ribosomal protein L34 | polymer | 95 | 10871.7 | 1 | UniProt (A0A287A119) Pfam (PF00468) UniProt (by SIFTS) (A0A4X1UFR4) | Sus scrofa (Pig) | |
| 71 | YB (B8) | Mitochondrial ribosomal protein L35 | polymer | 188 | 21548.5 | 1 | UniProt (F1SVC5) | Sus scrofa (Pig) | |
| 72 | ZB (B9) | Ribosomal protein | polymer | 100 | 10841.0 | 1 | UniProt (A0A287A731) Pfam (PF00444) | Sus scrofa (Pig) | |
| 73 | BC (BB) | CP tRNAPhe | polymer | 73 | 23402.0 | 1 | GenBank (76262549) | Sus scrofa | |
| 74 | CC (BC) | Elongation factor G, mitochondrial | polymer | 722 | 80141.2 | 1 | UniProt (Q96RP9) Pfam (PF00009) Pfam (PF03144) Pfam (PF14492) Pfam (PF03764) Pfam (PF00679) | Homo sapiens (Human) | EF-Gmt,Elongation factor G 1,mitochondrial,mEF-G 1,Elongation factor G1,hEFG1 |
| 75 | DC (BD) | uL2m | polymer | 306 | 33270.9 | 1 | UniProt (F1RRN2) Pfam (PF00181) | Sus scrofa (Pig) | |
| 76 | EC (BE) | ICT1 | polymer | 348 | 38427.2 | 1 | UniProt (A0A140UHW4) Pfam (PF00297) | Sus scrofa (Pig) | Mitochondrial ribosomal protein L3 |
| 77 | FC (BF) | Mitochondrial ribosomal protein L4 | polymer | 294 | 33251.5 | 1 | UniProt (A0A287B9C4) Pfam (PF00573) | Sus scrofa (Pig) | |
| 78 | GC (BI) | Mitochondrial ribosomal protein L9 | polymer | 268 | 30373.4 | 1 | UniProt (I3LR45) Pfam (PF01281) Pfam (PF22078) | Sus scrofa (Pig) | |
| 79 | HC (BJ) | Mitochondrial ribosomal protein L10 | polymer | 262 | 29449.7 | 1 | UniProt (F1RWJ0) Pfam (PF00466) | Sus scrofa (Pig) | |
| 80 | IC (BK) | Mitochondrial ribosomal protein L11 | polymer | 192 | 20809.3 | 1 | UniProt (F1RU54) Pfam (PF00298) | Sus scrofa (Pig) | |
| 81 | JC (BN) | uL13m | polymer | 178 | 20633.8 | 1 | UniProt (K7GP19) Pfam (PF00572) | Sus scrofa (Pig) | |
| 82 | KC (BO) | uL14m | polymer | 145 | 15955.6 | 1 | UniProt (A0A287BMZ6) Pfam (PF00238) | Sus scrofa (Pig) | |
| 83 | LC (BP) | uL15m | polymer | 296 | 33481.7 | 1 | UniProt (F1RSH0) | Sus scrofa (Pig) | |
| 84 | MC (BQ) | uL16m | polymer | 251 | 28680.5 | 1 | UniProt (F1RI89) Pfam (PF00252) | Sus scrofa (Pig) | |
| 85 | NC (BR) | Uncharacterized protein | polymer | 169 | 19268.2 | 1 | UniProt (F1RMQ4) Pfam (PF01196) | Sus scrofa (Pig) | |
| 86 | OC (BS) | Mitochondrial ribosomal protein L18 | polymer | 180 | 20582.6 | 1 | UniProt (A0A286ZNK1) Pfam (PF00861) | Sus scrofa (Pig) | |
| 87 | PC (BT) | Mitochondrial ribosomal protein L19 | polymer | 292 | 33441.5 | 1 | UniProt (I3LNJ0) Pfam (PF01245) | Sus scrofa (Pig) | |
| 88 | AD, AE, AF, AG, AH... (AA, Ag, BA, Am, An...) | MAGNESIUM ION | non-polymer | 24.3 | 326 | Chemie (MG) | |||
| 89 | DH, FH, GH, UC, VG... (Ap, B5, B9, Bx, AR...) | ZINC ION | non-polymer | 65.4 | 6 | Chemie (ZN) | |||
| 90 | GP, HP, VC (BA, AA) | SPERMINE | non-polymer | 202.3 | 3 | Chemie (SPM) | |||
| 91 | WG (AV) | N-FORMYLMETHIONINE | non-polymer | 177.2 | 1 | Chemie (FME) | |||
| 92 | ZG (Ag) | GUANOSINE-5'-TRIPHOSPHATE | non-polymer | 523.2 | 1 | Chemie (GTP) | |||
| 93 | EP, FP (BA) | GUANOSINE-5'-MONOPHOSPHATE | non-polymer | 363.2 | 2 | Chemie (5GP) | |||
| 94 | JP (BC) | PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER | non-polymer | 522.2 | 1 | Chemie (GNP) | |||
| 95 | SP, TP (Ag, BC) | water | water | 18.0 | 5 | Chemie (HOH) |
Sequence modifications
Bl: 1 - 166 (UniProt: A0A0R4J8D6)
AV: 1 - 68 (GenBank: 1208989970)
Ah: 1 - 387 (UniProt: F1RME2)
BB: 1 - 71 (GenBank: 76262549)
BC: 37 - 751 (UniProt: Q96RP9)
BQ: 1 - 251 (UniProt: F1RI89)
| PDB | External Database | Details |
|---|---|---|
| Arg 59 | Lys 59 | conflict |
| PDB | External Database | Details |
|---|---|---|
| C 69 | - | insertion |
| C 70 | - | insertion |
| A 71 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Unk 180 | - | insertion |
| Gln 181 | - | insertion |
| Lys 182 | - | insertion |
| Gly 184 | - | insertion |
| Glu 185 | Lys 181 | conflict |
| Pro 187 | Lys 183 | conflict |
| Ile 189 | Leu 185 | conflict |
| Ser 190 | Ile 186 | conflict |
| Ser 237 | - | insertion |
| Phe 238 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| C 72 | - | insertion |
| A 73 | - | insertion |
| PDB | External Database | Details |
|---|---|---|
| Ser 30 | - | expression tag |
| Gly 31 | - | expression tag |
| Gly 32 | - | expression tag |
| Ser 33 | - | expression tag |
| Gly 34 | - | expression tag |
| Ser 35 | - | expression tag |
| Gly 36 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| His 237 | Tyr 237 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 94 |
| Total formula weight | 13050257.1 | |
| Non-Polymers* | Number of molecules | 340 |
| Total formula weight | 10871.9 | |
| All* | Total formula weight | 13061129.0 |
