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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6Y7C

Early cytoplasmic yeast pre-40S particle (purified with Tsr1 as bait)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1220S ribosomal RNApolymer1735558895.71Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
2A40S ribosomal protein S0-Apolymer25228083.41UniProt (P32905)
Pfam (PF00318)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Nucleic acid-binding protein NAB1A,Small ribosomal subunit protein uS2-A
3B40S ribosomal protein S1-Apolymer25528798.51UniProt (P33442)
Pfam (PF01015)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP10A,Small ribosomal subunit protein eS1-A
4C40S ribosomal protein S2polymer25427490.81UniProt (P25443)
Pfam (PF00333)
Pfam (PF03719)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Omnipotent suppressor protein SUP44,RP12,S4,Small ribosomal subunit protein uS5,YS5
5E40S ribosomal protein S4-Apolymer26129469.31UniProt (P0CX35)
Pfam (PF16121)
Pfam (PF08071)
Pfam (PF01479)
Pfam (PF00900)
Pfam (PF00467)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP5,S7,Small ribosomal subunit protein eS4-A,YS6
6F40S ribosomal protein S5polymer22525072.61UniProt (P26783)
Pfam (PF00177)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP14,S2,Small ribosomal subunit protein uS7,YS8
7G40S ribosomal protein S6-Apolymer23627054.51UniProt (P0CX37)
Pfam (PF01092)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP9,S10,Small ribosomal subunit protein eS6-A,YS4
8H40S ribosomal protein S7-Apolymer19021658.21UniProt (P26786)
Pfam (PF01251)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP30,RP40,Small ribosomal subunit protein eS7-A
9I40S ribosomal protein S8-Apolymer20022537.81UniProt (P0CX39)
Pfam (PF01201)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP19,S14,Small ribosomal subunit protein eS8-A,YS9
10J40S ribosomal protein S9-Apolymer19722487.91UniProt (O13516)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP21,S13,Small ribosomal subunit protein uS4-A,YP28,YS11
11L40S ribosomal protein S11-Apolymer15617785.91UniProt (P0CX47)
Pfam (PF16205)
Pfam (PF00366)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP41,S18,Small ribosomal subunit protein uS17-A,YS12
12M40S ribosomal protein S12polymer14315488.61UniProt (P48589)
Pfam (PF01248)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Small ribosomal subunit protein eS12
13N40S ribosomal protein S13polymer15117059.91UniProt (P05756)
Pfam (PF08069)
Pfam (PF00312)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)S27a,Small ribosomal subunit protein uS15,YS15
14O40S ribosomal protein S14-Apolymer13714562.71UniProt (P06367)
Pfam (PF00411)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP59A,Small ribosomal subunit protein uS11-A
15P40S ribosomal protein S15polymer14216031.91UniProt (Q01855)
Pfam (PF00203)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RIG protein,RP52,S21,Small ribosomal subunit protein uS19,YS21
16Q40S ribosomal protein S16-Apolymer14315877.51UniProt (P0CX51)
Pfam (PF00380)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP61R,Small ribosomal subunit protein uS9-A
17R40S ribosomal protein S17-Apolymer13615820.41UniProt (P02407)
Pfam (PF00833)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP51A,Small ribosomal subunit protein eS17-A
18S40S ribosomal protein S18-Apolymer14617071.61UniProt (P0CX55)
Pfam (PF00416)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Small ribosomal subunit protein uS13-A
19T40S ribosomal protein S19-Apolymer14415942.11UniProt (P07280)
Pfam (PF01090)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP55A,S16a,Small ribosomal subunit protein eS19-A,YP45,YS16A
20U40S ribosomal protein S20polymer12113929.01UniProt (P38701)
Pfam (PF00338)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Small ribosomal subunit protein uS10
21V40S ribosomal protein S21-Apolymer879758.81UniProt (P0C0V8)
Pfam (PF01249)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)S26,Small ribosomal subunit protein eS21-A,YS25
22W40S ribosomal protein S22-Apolymer13014620.11UniProt (P0C0W1)
Pfam (PF00410)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP50,S24,Small ribosomal subunit protein uS8-A,YP58,YS22
23X40S ribosomal protein S23-Apolymer14516073.91UniProt (P0CX29)
Pfam (PF00164)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP37,S28,Small ribosomal subunit protein uS12-A,YS14
24Y40S ribosomal protein S24-Apolymer13515362.81UniProt (P0CX31)
Pfam (PF01282)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP50,Small ribosomal subunit protein eS24-A
25Z40S ribosomal protein S25-Apolymer10812067.31UniProt (Q3E792)
Pfam (PF03297)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP45,S31,Small ribosomal subunit protein eS25-A,YS23
26b40S ribosomal protein S27-Apolymer828893.41UniProt (P35997)
Pfam (PF01667)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)RP61,Small ribosomal subunit protein eS27-A,YS20
27c40S ribosomal protein S28-Apolymer677605.81UniProt (Q3E7X9)
Pfam (PF01200)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)S33,Small ribosomal subunit protein eS28-A,YS27
28d40S ribosomal protein S29-Apolymer566675.71UniProt (P41057)
Pfam (PF00253)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)S36,Small ribosomal subunit protein uS14-A,YS29
29e40S ribosomal protein S30-Apolymer637137.51UniProt (P0CX33)
Pfam (PF04758)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Small ribosomal subunit protein eS30-A
30hPre-rRNA-processing protein PNO1polymer27430380.61UniProt (Q99216)
Pfam (PF17903)
Pfam (PF22891)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Partner of NOB1,Ribosomal RNA-processing protein 20
31iEssential nuclear protein 1polymer48355207.41UniProt (P38333)
Pfam (PF05291)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
32jProtein LTV1polymer46353463.31UniProt (P34078)
Pfam (PF04180)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)Low-temperature viability protein 1
33lSerine/threonine-protein kinase RIO2polymer42549192.91UniProt (P40160)
Pfam (PF09202)
Pfam (PF01163)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)
34tRibosome biogenesis protein TSR1polymer78890876.51UniProt (Q07381)
Pfam (PF22298)
Pfam (PF08142)
Pfam (PF04950)
In PDB		Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast)20S rRNA accumulation protein 1
Sequence modifications
A: 1 - 252 (UniProt: P32905)
PDBExternal DatabaseDetails
Phe 206Asp 206conflict
W: 1 - 130 (UniProt: P0C0W1)
PDBExternal DatabaseDetails
Val 51Glu 51conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains34
Total formula weight1328434.6
All*Total formula weight1328434.6
*Water molecules are not included.

226262

PDB entries from 2024-10-16

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