6Y6A
Structure of Finch Polyomavirus VP1 in complex with 2-O-Methyl-5-N-acetyl-alpha-D-neuraminic acid
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, AA, B, BA, C... (A, B, C, D, E...) | Capsid protein VP1 | polymer | 274 | 29826.3 | 40 | UniProt (R4UMH0) Pfam (PF00718) | Finch polyomavirus | |
| 2 | AD, CB, CC, CD, EC... (c, G, R, d, S...) | N-acetyl-alpha-neuraminic acid | non-polymer | 309.3 | 29 | Chemie (SIA) | |||
| 3 | AB, AC, BB, BC, BD... (F, Q, c, G, R...) | CHLORIDE ION | non-polymer | 35.5 | 53 | Chemie (CL) | |||
| 4 | WA (C) | MAGNESIUM ION | non-polymer | 24.3 | 1 | Chemie (MG) | |||
| 5 | AE, AF, BE, BF, CE... (H, h, I, i, J...) | water | water | 18.0 | 2375 | Chemie (HOH) |
Sequence modifications
A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d, e, f, g, h, i, j, k, l, m, n: 22 - 291 (UniProt: R4UMH0)
| PDB | External Database | Details |
|---|---|---|
| Gly 18 | - | expression tag |
| Ser 19 | - | expression tag |
| His 20 | - | expression tag |
| Met 21 | - | expression tag |
| Ser 78 | Cys 79 | conflict |
| Ser 92 | Cys 93 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 40 |
| Total formula weight | 1193051.8 | |
| Non-Polymers* | Number of molecules | 83 |
| Total formula weight | 10872.1 | |
| All* | Total formula weight | 1203923.9 |
