6Y66

Structure of Goose Hemorrhagic Polyomavirus VP1 in complex with 2-O-Methyl-5-N-acetyl-alpha-D-neuraminic acid

This is a non-PDB format compatible entry.

Entity

Entity ID	Chain ID	Description	Type	Chain length	Formula weight	Number of molecules	DB Name (Accession)	Biological source	Descriptive keywords
1	A, B, C, D, E... (AAA, BBB, CCC, DDD, EEE...)	Capsid protein VP1	polymer	287	31161.3	10	UniProt (Q80FI3) Pfam (PF00718)	Goose hemorrhagic polyomavirus
2	GA, JA, K, NA, P... (FFF, GGG, AAA, HHH, BBB...)	2-O-methyl-5-N-acetyl-alpha-D-neuraminic acid	non-polymer		323.3	10	Chemie (MNA)
3	AA, KA, L, S, W (EEE, GGG, AAA, CCC, DDD)	IMIDAZOLE	non-polymer		69.1	5	Chemie (IMD)
4	BA, CA, DA, EA, FA... (EEE, FFF, GGG, AAA, HHH...)	1,2-ETHANEDIOL	non-polymer		62.1	22	Chemie (EDO)
5	AB, BB, CB, DB, EB... (FFF, GGG, HHH, III, JJJ...)	water	water		18.0	2665	Chemie (HOH)

Sequence modifications

AAA, BBB, CCC, DDD, EEE, FFF, GGG, HHH, III, JJJ: 21 - 286 (UniProt: Q80FI3)

PDB	External Database	Details
Met 0	-	initiating methionine
Gly 1	-	expression tag
Ser 2	-	expression tag
Ser 3	-	expression tag
His 4	-	expression tag
His 5	-	expression tag
His 6	-	expression tag
His 7	-	expression tag
His 8	-	expression tag
His 9	-	expression tag
Ser 10	-	expression tag
Ser 11	-	expression tag
Gly 12	-	expression tag
Leu 13	-	expression tag
Val 14	-	expression tag
Pro 15	-	expression tag
Arg 16	-	expression tag
Gly 17	-	expression tag
Ser 18	-	expression tag
His 19	-	expression tag
Met 20	-	expression tag

Contents of the asymmetric unit

Polymers	Number of chains	10
	Total formula weight	311613.3
Non-Polymers*	Number of molecules	37
	Total formula weight	4943.9
All*	Total formula weight	316557.2

*Water molecules are not included.