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6Y57

Structure of human ribosome in hybrid-PRE state

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A4)
mRNApolymer164853.71Homo sapiens
2B
(B4)
P/E tRNApolymer7524231.51GenBank (174924)Homo sapiens
3C
(D4)
A/P tRNApolymer7624485.51Homo sapiens
4D
(L5)
28S ribosomal RNApolymer50701640182.01GenBank (86475748)Homo sapiens
5E
(L7)
5S ribosomal RNApolymer12038691.91GenBank (23898)Homo sapiens
6F
(L8)
5.8S ribosomal RNApolymer15650143.61GenBank (555853)Homo sapiens
7G
(LA)
60S ribosomal protein L8polymer25728088.91UniProt (P62917)
Pfam (PF00181)
Pfam (PF03947)
Homo sapiens (Human)Large ribosomal subunit protein uL2
8H
(LB)
60S ribosomal protein L3polymer40346211.11UniProt (P39023)
Pfam (PF00297)
Homo sapiens (Human)HIV-1 TAR RNA-binding protein B,TARBP-B,Large ribosomal subunit protein uL3
9I
(LC)
60S ribosomal protein L4polymer42747804.61UniProt (P36578)
Pfam (PF00573)
Pfam (PF14374)
Homo sapiens (Human)60S ribosomal protein L1,Large ribosomal subunit protein uL4
10J
(LD)
60S ribosomal protein L5polymer29734426.81UniProt (P46777)
Pfam (PF17144)
Pfam (PF14204)
Homo sapiens (Human)Large ribosomal subunit protein uL18
11K
(LE)
60S ribosomal protein L6polymer28832810.21UniProt (Q02878)
Pfam (PF03868)
Pfam (PF01159)
Homo sapiens (Human)Large ribosomal subunit protein eL6,Neoplasm-related protein C140,Tax-responsive enhancer element-binding protein 107,TaxREB107
12L
(LF)
60S ribosomal protein L7polymer24829291.01UniProt (P18124)
Pfam (PF08079)
Pfam (PF00327)
Homo sapiens (Human)Large ribosomal subunit protein uL30
13M
(LG)
60S ribosomal protein L7apolymer26630061.81UniProt (P62424)
Pfam (PF01248)
Homo sapiens (Human)Large ribosomal subunit protein eL8,PLA-X polypeptide,Surfeit locus protein 3
14N
(LH)
60S ribosomal protein L9polymer19221899.51UniProt (P32969)
Pfam (PF00347)
Homo sapiens (Human)Large ribosomal subunit protein uL6
15O
(LI)
60S ribosomal protein L10-likepolymer21424570.91UniProt (Q96L21)
Pfam (PF00252)
Homo sapiens (Human)Large ribosomal subunit protein uL16-like
16P
(LJ)
60S ribosomal protein L11polymer17820288.51UniProt (P62913)
Pfam (PF00281)
Pfam (PF00673)
Homo sapiens (Human)CLL-associated antigen KW-12,Large ribosomal subunit protein uL5
17Q
(LL)
60S ribosomal protein L13polymer21124321.71UniProt (P26373)
Pfam (PF01294)
Homo sapiens (Human)Breast basic conserved protein 1,Large ribosomal subunit protein eL13
18R
(LM)
60S ribosomal protein L14polymer21523485.01UniProt (P50914)
Pfam (PF01929)
Homo sapiens (Human)CAG-ISL 7,Large ribosomal subunit protein eL14
19S
(LN)
60S ribosomal protein L15polymer20424207.31UniProt (P61313)
Pfam (PF00827)
Homo sapiens (Human)Large ribosomal subunit protein eL15
20T
(LO)
60S ribosomal protein L13apolymer20323633.41UniProt (P40429)
Pfam (PF00572)
Homo sapiens (Human)23 kDa highly basic protein,Large ribosomal subunit protein uL13
21U
(LP)
60S ribosomal protein L17polymer18421443.21UniProt (P18621)
Pfam (PF00237)
Homo sapiens (Human)60S ribosomal protein L23,Large ribosomal subunit protein uL22,PD-1
22V
(LQ)
60S ribosomal protein L18polymer18821687.71UniProt (Q07020)
Pfam (PF17135)
Homo sapiens (Human)Large ribosomal subunit protein eL18
23W
(LR)
60S ribosomal protein L19polymer19623535.31UniProt (P84098)
Pfam (PF01280)
Homo sapiens (Human)Large ribosomal subunit protein eL19
24X
(LS)
60S ribosomal protein L18apolymer17620808.51UniProt (Q02543)
Pfam (PF01775)
Homo sapiens (Human)Large ribosomal subunit protein eL20
25Y
(LT)
60S ribosomal protein L21polymer16018610.01UniProt (P46778)
Pfam (PF01157)
Homo sapiens (Human)Large ribosomal subunit protein eL21
26Z
(LU)
60S ribosomal protein L22polymer12814813.01UniProt (P35268)
Pfam (PF01776)
Homo sapiens (Human)EBER-associated protein,EAP,Epstein-Barr virus small RNA-associated protein,Heparin-binding protein HBp15,Large ribosomal subunit protein eL22
27AA
(LV)
60S ribosomal protein L23polymer14014892.51UniProt (P62829)
Pfam (PF00238)
Homo sapiens (Human)60S ribosomal protein L17,Large ribosomal subunit protein uL14
28BA
(LW)
60S ribosomal protein L24polymer15717825.11UniProt (P83731)
Pfam (PF01246)
Homo sapiens (Human)60S ribosomal protein L30,Large ribosomal subunit protein eL24
29CA
(LX)
60S ribosomal protein L23apolymer15617740.21UniProt (P62750)
Pfam (PF03939)
Pfam (PF00276)
Homo sapiens (Human)Large ribosomal subunit protein uL23
30DA
(LY)
60S ribosomal protein L26polymer14517303.41UniProt (P61254)
Pfam (PF16906)
Pfam (PF00467)
Homo sapiens (Human)Large ribosomal subunit protein uL24
31EA
(LZ)
60S ribosomal protein L27polymer13615835.81UniProt (P61353)
Pfam (PF00467)
Pfam (PF01777)
Homo sapiens (Human)Large ribosomal subunit protein eL27
32FA
(La)
60S ribosomal protein L27apolymer14816604.51UniProt (P46776)
Pfam (PF00828)
Homo sapiens (Human)Large ribosomal subunit protein uL15
33GA
(Lb)
60S ribosomal protein L29polymer15917804.31UniProt (P47914)
Pfam (PF01779)
Homo sapiens (Human)Cell surface heparin-binding protein HIP,Large ribosomal subunit protein eL29
34HA
(Lc)
60S ribosomal protein L30polymer11512805.11UniProt (P62888)
Pfam (PF01248)
Homo sapiens (Human)Large ribosomal subunit protein eL30
35IA
(Ld)
60S ribosomal protein L31polymer12514494.91UniProt (P62899)
Pfam (PF01198)
Homo sapiens (Human)Large ribosomal subunit protein eL31
36JA
(Le)
60S ribosomal protein L32polymer13515898.91UniProt (P62910)
Pfam (PF01655)
Homo sapiens (Human)Large ribosomal subunit protein eL32
37KA
(Lf)
60S ribosomal protein L35apolymer11012564.71UniProt (P18077)
Pfam (PF01247)
Homo sapiens (Human)Cell growth-inhibiting gene 33 protein,Large ribosomal subunit protein eL33
38LA
(Lg)
60S ribosomal protein L34polymer11713326.11UniProt (P49207)
Pfam (PF01199)
Homo sapiens (Human)Large ribosomal subunit protein eL34
39MA
(Lh)
60S ribosomal protein L35polymer12314593.61UniProt (P42766)
Pfam (PF00831)
Homo sapiens (Human)Large ribosomal subunit protein uL29
40NA
(Li)
60S ribosomal protein L36polymer10512290.91UniProt (Q9Y3U8)
Pfam (PF01158)
Homo sapiens (Human)Large ribosomal subunit protein eL36
41OA
(Lj)
60S ribosomal protein L37polymer9711111.01UniProt (P61927)
Pfam (PF01907)
Homo sapiens (Human)G1.16,Large ribosomal subunit protein eL37
42PA
(Lk)
60S ribosomal protein L38polymer708238.91UniProt (P63173)
Pfam (PF01781)
Homo sapiens (Human)Large ribosomal subunit protein eL38
43QA
(Ll)
60S ribosomal protein L39polymer516426.81UniProt (P62891)
Pfam (PF00832)
Homo sapiens (Human)Large ribosomal subunit protein eL39
44RA
(Lm)
Ubiquitin-60S ribosomal protein L40polymer12814758.41UniProt (P62987)
Pfam (PF00240)
Pfam (PF01020)
Homo sapiens (Human)CEP52,Ubiquitin A-52 residue ribosomal protein fusion product 1
45SA
(Ln)
60S ribosomal protein L41polymer253473.51UniProt (P62945)
Pfam (PF05162)
Homo sapiens (Human)HG12,Large ribosomal subunit protein eL41
46TA
(Lo)
60S ribosomal protein L36apolymer10612477.01UniProt (P83881)
Pfam (PF00935)
Homo sapiens (Human)60S ribosomal protein L44,Cell growth-inhibiting gene 15 protein,Cell migration-inducing gene 6 protein,Large ribosomal subunit protein eL42
47UA
(Lp)
60S ribosomal protein L37apolymer9210299.41UniProt (P61513)
Pfam (PF01780)
Homo sapiens (Human)Large ribosomal subunit protein eL43
48VA
(Lr)
60S ribosomal protein L28polymer13715784.61UniProt (P46779)
Pfam (PF01778)
Homo sapiens (Human)Large ribosomal subunit protein eL28
49WA
(S2)
18S ribosomal RNApolymer1869602752.91GenBank (36162)Homo sapiens (Human)
50XA
(SA)
40S ribosomal protein SApolymer29532883.91UniProt (P08865)
Pfam (PF00318)
Pfam (PF16122)
Homo sapiens (Human)37 kDa laminin receptor precursor,37LRP,37/67 kDa laminin receptor,LRP/LR,67 kDa laminin receptor,67LR,Colon carcinoma laminin-binding protein,Laminin receptor 1,LamR,Laminin-binding protein precursor p40,LBP/p40,Multidrug resistance-associated protein MGr1-Ag,NEM/1CHD4,Small ribosomal subunit protein uS2
51YA
(SB)
40S ribosomal protein S3apolymer26430002.11UniProt (P61247)
Pfam (PF01015)
Homo sapiens (Human)Small ribosomal subunit protein eS1,v-fos transformation effector protein,Fte-1
52ZA
(SC)
40S ribosomal protein S2polymer29331376.51UniProt (P15880)
Pfam (PF00333)
Pfam (PF03719)
Homo sapiens (Human)40S ribosomal protein S4,Protein LLRep3,Small ribosomal subunit protein uS5
53AB
(SD)
40S ribosomal protein S3polymer24326729.41UniProt (P23396)
Pfam (PF07650)
Pfam (PF00189)
Homo sapiens (Human)Small ribosomal subunit protein uS3
54BB
(SE)
40S ribosomal protein S4, X isoformpolymer26329654.91UniProt (P62701)
Pfam (PF08071)
Pfam (PF00900)
Pfam (PF00467)
Pfam (PF16121)
Homo sapiens (Human)SCR10,Single copy abundant mRNA protein,Small ribosomal subunit protein eS4
55CB
(SF)
40S ribosomal protein S5polymer20422913.51UniProt (P46782)
Pfam (PF00177)
Homo sapiens (Human)Small ribosomal subunit protein uS7
56DB
(SG)
40S ribosomal protein S6polymer24928751.91UniProt (P62753)
Pfam (PF01092)
Homo sapiens (Human)Phosphoprotein NP33,Small ribosomal subunit protein eS6
57EB
(SH)
40S ribosomal protein S7polymer19422168.91UniProt (P62081)
Pfam (PF01251)
Homo sapiens (Human)Small ribosomal subunit protein eS7
58FB
(SI)
40S ribosomal protein S8polymer20824263.41UniProt (P62241)
Pfam (PF01201)
Homo sapiens (Human)Small ribosomal subunit protein eS8
59GB
(SJ)
40S ribosomal protein S9polymer19422641.61UniProt (P46781)
Pfam (PF00163)
Pfam (PF01479)
Homo sapiens (Human)Small ribosomal subunit protein uS4
60HB
(SK)
40S ribosomal protein S10polymer16518933.81UniProt (P46783)
Pfam (PF03501)
Homo sapiens (Human)Small ribosomal subunit protein eS10
61IB
(SL)
40S ribosomal protein S11polymer15818468.81UniProt (P62280)
Pfam (PF16205)
Pfam (PF00366)
Homo sapiens (Human)Small ribosomal subunit protein uS17
62JB
(SN)
40S ribosomal protein S13polymer15117259.41UniProt (P62277)
Pfam (PF08069)
Pfam (PF00312)
Homo sapiens (Human)Small ribosomal subunit protein uS15
63KB
(SO)
40S ribosomal protein S14polymer15116302.81UniProt (P62263)
Pfam (PF00411)
Homo sapiens (Human)Small ribosomal subunit protein uS11
64LB
(SP)
40S ribosomal protein S15polymer14517076.21UniProt (P62841)
Pfam (PF00203)
Homo sapiens (Human)RIG protein,Small ribosomal subunit protein uS19
65MB
(SQ)
40S ribosomal protein S16polymer14616477.41UniProt (P62249)
Pfam (PF00380)
Homo sapiens (Human)Small ribosomal subunit protein uS9
66NB
(SR)
40S ribosomal protein S17polymer13515578.21UniProt (P08708)
Pfam (PF00833)
Homo sapiens (Human)Small ribosomal subunit protein eS17
67OB
(SS)
40S ribosomal protein S18polymer15217759.81UniProt (P62269)
Pfam (PF00416)
Homo sapiens (Human)Ke-3,Ke3,Small ribosomal subunit protein uS13
68PB
(ST)
40S ribosomal protein S19polymer14516091.61UniProt (P39019)
Pfam (PF01090)
Homo sapiens (Human)Small ribosomal subunit protein eS19
69QB
(SU)
40S ribosomal protein S20polymer11913398.81UniProt (P60866)
Pfam (PF00338)
Homo sapiens (Human)Small ribosomal subunit protein uS10
70RB
(SV)
40S ribosomal protein S21polymer839124.41UniProt (P63220)
Pfam (PF01249)
Homo sapiens (Human)Small ribosomal subunit protein eS21
71SB
(SW)
40S ribosomal protein S15apolymer13014865.61UniProt (P62244)
Pfam (PF00410)
Homo sapiens (Human)Small ribosomal subunit protein uS8
72TB
(SX)
40S ribosomal protein S23polymer14315844.71UniProt (P62266)
Pfam (PF00164)
Homo sapiens (Human)Small ribosomal subunit protein uS12
73UB
(SY)
40S ribosomal protein S24polymer13315463.31UniProt (P62847)
Pfam (PF01282)
Homo sapiens (Human)Small ribosomal subunit protein eS24
74VB
(SZ)
40S ribosomal protein S25polymer12513776.21UniProt (P62851)
Pfam (PF03297)
Homo sapiens (Human)Small ribosomal subunit protein eS25
75WB
(Sa)
40S ribosomal protein S26polymer11513047.51UniProt (P62854)
Pfam (PF01283)
Homo sapiens (Human)Small ribosomal subunit protein eS26
76XB
(Sb)
40S ribosomal protein S27polymer849480.21UniProt (P42677)
Pfam (PF01667)
Homo sapiens (Human)Metallopan-stimulin 1,MPS-1,Small ribosomal subunit protein eS27
77YB
(Sc)
40S ribosomal protein S28polymer697855.11UniProt (P62857)
Pfam (PF01200)
Homo sapiens (Human)Small ribosomal subunit protein eS28
78ZB
(Sd)
40S ribosomal protein S29polymer566690.81UniProt (P62273)
Pfam (PF00253)
Homo sapiens (Human)Small ribosomal subunit protein uS14
79AC
(Se)
40S ribosomal protein S30polymer596668.91UniProt (P62861)
Pfam (PF04758)
Homo sapiens (Human)Small ribosomal subunit protein eS30
80BC
(Sf)
40S ribosomal protein S12polymer13214539.01UniProt (P25398)
Pfam (PF01248)
Homo sapiens (Human)Small ribosomal subunit protein eS12
81CC
(Sg)
Receptor of activated protein C kinase 1polymer31735115.71UniProt (P63244)
Pfam (PF00400)
Homo sapiens (Human)Cell proliferation-inducing gene 21 protein,Guanine nucleotide-binding protein subunit beta-2-like 1,Guanine nucleotide-binding protein subunit beta-like protein 12.3,Human lung cancer oncogene 7 protein,HLC-7,Receptor for activated C kinase,Small ribosomal subunit protein RACK1
82DC
(sh)
Ubiquitin-40S ribosomal protein S27apolymer15618004.01UniProt (P62979)
Pfam (PF00240)
Pfam (PF01599)
Homo sapiens (Human)Ubiquitin carboxyl extension protein 80
83AD, AE, AF, AG, AH...
(L5, LV, S2, Le, Lg...)
MAGNESIUM IONnon-polymer24.3160Chemie (MG)
84DG, EG, FG, GG, HG...
(Lg, Lj, Lm, Lo, Lp...)
ZINC IONnon-polymer65.47Chemie (ZN)
85PI, QI, RI, SI, TI...
(L5, LH, LI, LP, La...)
waterwater18.019Chemie (HOH)
Sequence modifications
L5: 1 - 5070 (GenBank: 86475748)
PDBExternal DatabaseDetails
C 2113G 115460conflict
S2: 1 - 1869 (GenBank: 36162)
PDBExternal DatabaseDetails
C 582U 582conflict
C 583A 583conflict
G 584A 584conflict
A 798G 798conflict
U 1095C 1095conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains82
Total formula weight3833097.1
Non-Polymers*Number of molecules167
Total formula weight4346.7
All*Total formula weight3837443.7
*Water molecules are not included.

245663

PDB entries from 2025-12-03

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