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SummaryStructural detailsExperimental detailsFunctional detailsSequence NeighborHistoryDownloads

6XZB

E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).

This is a non-PDB format compatible entry.
Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A116S rRNApolymer1534497405.01Escherichia coli K-12
2B130S ribosomal protein S2polymer22424971.81UniProt (P0A7V0)
Pfam (PF00318)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS2
3C130S ribosomal protein S3polymer20623078.81UniProt (P0A7V3)
Pfam (PF07650)
Pfam (PF00189)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS3
4D130S ribosomal protein S4polymer20523383.01UniProt (P0A7V8)
Pfam (PF00163)
Pfam (PF01479)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS4
5E130S ribosomal protein S5polymer15516361.91UniProt (P0A7W1)
Pfam (PF03719)
Pfam (PF00333)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS5
6F130S ribosomal protein S6polymer10612326.31UniProt (P02358)
Pfam (PF01250)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein bS6
7G130S ribosomal protein S7polymer15116861.51UniProt (P02359)
Pfam (PF00177)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS7
8H130S ribosomal protein S8polymer12914015.41UniProt (P0A7W7)
Pfam (PF00410)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS8
9I130S ribosomal protein S9polymer12714554.91UniProt (P0A7X3)
Pfam (PF00380)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS9
10J130S ribosomal protein S10polymer9911325.11UniProt (P0A7R5)
Pfam (PF00338)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS10
11K130S ribosomal protein S11polymer11712487.21UniProt (P0A7R9)
Pfam (PF00411)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS11
12L130S ribosomal protein S12polymer12313683.11UniProt (P0A7S3)
Pfam (PF00164)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS12
13M130S ribosomal protein S13polymer11412625.81UniProt (P0A7S9)
Pfam (PF00416)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS13
14N130S ribosomal protein S14polymer10011475.41UniProt (P0AG59)
Pfam (PF00253)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS14
15O130S ribosomal protein S15polymer8810159.61UniProt (P0ADZ4)
Pfam (PF00312)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS15
16P130S ribosomal protein S16polymer829207.61UniProt (P0A7T3)
Pfam (PF00886)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein bS16
17Q130S ribosomal protein S17polymer809263.91UniProt (P0AG63)
Pfam (PF00366)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS17
18R130S ribosomal protein S18polymer556466.51UniProt (P0A7T7)
Pfam (PF01084)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein bS18
19S130S ribosomal protein S19polymer799057.61UniProt (P0A7U3)
Pfam (PF00203)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein uS19
20T130S ribosomal protein S20polymer869577.31UniProt (P0A7U7)
Pfam (PF01649)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein bS20
21U130S ribosomal protein S21polymer566629.71UniProt (P68679)
Pfam (PF01165)
In PDB		Escherichia coli (strain K12)Small ribosomal subunit protein bS21
22A223S rRNApolymer2897939609.31Escherichia coli K-12
23B25S rRNApolymer12038790.11Escherichia coli K-12
24C250S ribosomal protein L2polymer27129663.21UniProt (P60422)
Pfam (PF00181)
Pfam (PF03947)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL2
25D250S ribosomal protein L3polymer20922291.61UniProt (P60438)
Pfam (PF00297)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL3
26E250S ribosomal protein L4polymer20122121.61UniProt (P60723)
Pfam (PF00573)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL4
27F250S ribosomal protein L5polymer17720073.21UniProt (P62399)
Pfam (PF00281)
Pfam (PF00673)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL5
28G250S ribosomal protein L6polymer17618801.61UniProt (P0AG55)
Pfam (PF00347)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL6
29H250S ribosomal protein L10polymer13514568.71UniProt (P0A7J3)
Pfam (PF00466)
In PDB		Escherichia coli (strain K12)50S ribosomal protein L8,Large ribosomal subunit protein uL10
30I250S ribosomal protein L11polymer13414020.31UniProt (P0A7J7)
Pfam (PF03946)
Pfam (PF00298)
In PDB		Escherichia coli (strain K12)
31J250S ribosomal protein L13polymer14216050.61UniProt (P0AA10)
Pfam (PF00572)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL13
32K250S ribosomal protein L14polymer12313565.11UniProt (P0ADY3)
Pfam (PF00238)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL14
33L250S ribosomal protein L15polymer14415008.51UniProt (P02413)
Pfam (PF00828)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL15
34M250S ribosomal protein L16polymer13615327.31UniProt (P0ADY7)
Pfam (PF00252)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL16
35N250S ribosomal protein L17polymer12514193.51UniProt (P0AG44)
Pfam (PF01196)
In PDB		Escherichia coli (strain K12)
36O250S ribosomal protein L18polymer11712794.71UniProt (P0C018)
Pfam (PF00861)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL18
37P250S ribosomal protein L19polymer11413028.11UniProt (P0A7K6)
Pfam (PF01245)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL19
38Q250S ribosomal protein L20polymer11713396.81UniProt (P0A7L3)
Pfam (PF00453)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL20
39R250S ribosomal protein L21polymer10311586.41UniProt (P0AG48)
Pfam (PF00829)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL21
40S250S ribosomal protein L22polymer11012253.41UniProt (P61175)
Pfam (PF00237)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL22
41T250S ribosomal protein L23polymer9310546.51UniProt (P0ADZ0)
Pfam (PF00276)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL23
42U250S ribosomal protein L24polymer10211078.91UniProt (P60624)
Pfam (PF00467)
Pfam (PF17136)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL24
43V250S ribosomal protein L25polymer9410713.51UniProt (P68919)
Pfam (PF01386)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL25
44W250S ribosomal protein L27polymer768275.51UniProt (P0A7L8)
Pfam (PF01016)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL27
45X250S ribosomal protein L28polymer778896.41UniProt (P0A7M2)
Pfam (PF00830)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL28
46Y250S ribosomal protein L29polymer627155.31UniProt (P0A7M6)
Pfam (PF00831)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL29
47Z250S ribosomal protein L30polymer586423.61UniProt (P0AG51)
Pfam (PF00327)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein uL30
48a250S ribosomal protein L32polymer566332.21UniProt (P0A7N4)
Pfam (PF01783)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL32
49b250S ribosomal protein L33polymer515928.01UniProt (P0A7N9)
Pfam (PF00471)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL33
50c250S ribosomal protein L34polymer465397.51UniProt (P0A7P5)
Pfam (PF00468)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL34
51d250S ribosomal protein L35polymer647181.81UniProt (P0A7Q1)
Pfam (PF01632)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL35,Ribosomal protein A
52e250S ribosomal protein L36polymer384377.41UniProt (P0A7Q6)
Pfam (PF00444)
In PDB		Escherichia coli (strain K12)Large ribosomal subunit protein bL36-A,Ribosomal protein B
53f2Deacylated tRNAi(Met)polymer7624541.71Escherichia coli K-12
54g2fMet-Phe-tRNA(Phe)polymer7625167.51Saccharomyces cerevisiae (baker's yeast)
55A2Dirithromycinnon-polymer835.11Chemie (DI0)
Sequence modifications
H2: 2 - 136 (UniProt: P0A7J3)
PDBExternal DatabaseDetails
Val 85Ser 85conflict
Thr 86Met 86conflict
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains54
Total formula weight2164076.6
Non-Polymers*Number of molecules1
Total formula weight835.1
All*Total formula weight2164911.7
*Water molecules are not included.

219515

PDB entries from 2024-05-08

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