6XZB
E. coli 70S ribosome in complex with dirithromycin, fMet-Phe-tRNA(Phe) and deacylated tRNA(iMet) (focused classification).
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A1) | 16S rRNA | polymer | 1534 | 497405.0 | 1 | Escherichia coli K-12 | ||
| 2 | B (B1) | 30S ribosomal protein S2 | polymer | 224 | 24971.8 | 1 | UniProt (P0A7V0) Pfam (PF00318) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS2 |
| 3 | C (C1) | 30S ribosomal protein S3 | polymer | 206 | 23078.8 | 1 | UniProt (P0A7V3) Pfam (PF07650) Pfam (PF00189) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS3 |
| 4 | D (D1) | 30S ribosomal protein S4 | polymer | 205 | 23383.0 | 1 | UniProt (P0A7V8) Pfam (PF00163) Pfam (PF01479) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS4 |
| 5 | E (E1) | 30S ribosomal protein S5 | polymer | 155 | 16361.9 | 1 | UniProt (P0A7W1) Pfam (PF03719) Pfam (PF00333) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS5 |
| 6 | F (F1) | 30S ribosomal protein S6 | polymer | 106 | 12326.3 | 1 | UniProt (P02358) Pfam (PF01250) | Escherichia coli (strain K12) | Small ribosomal subunit protein bS6 |
| 7 | G (G1) | 30S ribosomal protein S7 | polymer | 151 | 16861.5 | 1 | UniProt (P02359) Pfam (PF00177) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS7 |
| 8 | H (H1) | 30S ribosomal protein S8 | polymer | 129 | 14015.4 | 1 | UniProt (P0A7W7) Pfam (PF00410) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS8 |
| 9 | I (I1) | 30S ribosomal protein S9 | polymer | 127 | 14554.9 | 1 | UniProt (P0A7X3) Pfam (PF00380) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS9 |
| 10 | J (J1) | 30S ribosomal protein S10 | polymer | 99 | 11325.1 | 1 | UniProt (P0A7R5) Pfam (PF00338) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS10 |
| 11 | K (K1) | 30S ribosomal protein S11 | polymer | 117 | 12487.2 | 1 | UniProt (P0A7R9) Pfam (PF00411) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS11 |
| 12 | L (L1) | 30S ribosomal protein S12 | polymer | 123 | 13683.1 | 1 | UniProt (P0A7S3) Pfam (PF00164) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS12 |
| 13 | M (M1) | 30S ribosomal protein S13 | polymer | 114 | 12625.8 | 1 | UniProt (P0A7S9) Pfam (PF00416) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS13 |
| 14 | N (N1) | 30S ribosomal protein S14 | polymer | 100 | 11475.4 | 1 | UniProt (P0AG59) Pfam (PF00253) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS14 |
| 15 | O (O1) | 30S ribosomal protein S15 | polymer | 88 | 10159.6 | 1 | UniProt (P0ADZ4) Pfam (PF00312) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS15 |
| 16 | P (P1) | 30S ribosomal protein S16 | polymer | 82 | 9207.6 | 1 | UniProt (P0A7T3) Pfam (PF00886) | Escherichia coli (strain K12) | Small ribosomal subunit protein bS16 |
| 17 | Q (Q1) | 30S ribosomal protein S17 | polymer | 80 | 9263.9 | 1 | UniProt (P0AG63) Pfam (PF00366) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS17 |
| 18 | R (R1) | 30S ribosomal protein S18 | polymer | 55 | 6466.5 | 1 | UniProt (P0A7T7) Pfam (PF01084) | Escherichia coli (strain K12) | Small ribosomal subunit protein bS18 |
| 19 | S (S1) | 30S ribosomal protein S19 | polymer | 79 | 9057.6 | 1 | UniProt (P0A7U3) Pfam (PF00203) | Escherichia coli (strain K12) | Small ribosomal subunit protein uS19 |
| 20 | T (T1) | 30S ribosomal protein S20 | polymer | 86 | 9577.3 | 1 | UniProt (P0A7U7) Pfam (PF01649) | Escherichia coli (strain K12) | Small ribosomal subunit protein bS20 |
| 21 | U (U1) | 30S ribosomal protein S21 | polymer | 56 | 6629.7 | 1 | UniProt (P68679) Pfam (PF01165) | Escherichia coli (strain K12) | Small ribosomal subunit protein bS21 |
| 22 | V (A2) | 23S rRNA | polymer | 2897 | 939609.3 | 1 | Escherichia coli K-12 | ||
| 23 | W (B2) | 5S rRNA | polymer | 120 | 38790.1 | 1 | Escherichia coli K-12 | ||
| 24 | X (C2) | 50S ribosomal protein L2 | polymer | 271 | 29663.2 | 1 | UniProt (P60422) Pfam (PF00181) Pfam (PF03947) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL2 |
| 25 | Y (D2) | 50S ribosomal protein L3 | polymer | 209 | 22291.6 | 1 | UniProt (P60438) Pfam (PF00297) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL3 |
| 26 | Z (E2) | 50S ribosomal protein L4 | polymer | 201 | 22121.6 | 1 | UniProt (P60723) Pfam (PF00573) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL4 |
| 27 | AA (F2) | 50S ribosomal protein L5 | polymer | 177 | 20073.2 | 1 | UniProt (P62399) Pfam (PF00281) Pfam (PF00673) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL5 |
| 28 | BA (G2) | 50S ribosomal protein L6 | polymer | 176 | 18801.6 | 1 | UniProt (P0AG55) Pfam (PF00347) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL6 |
| 29 | CA (H2) | 50S ribosomal protein L10 | polymer | 135 | 14568.7 | 1 | UniProt (P0A7J3) Pfam (PF00466) | Escherichia coli (strain K12) | 50S ribosomal protein L8,Large ribosomal subunit protein uL10 |
| 30 | DA (I2) | 50S ribosomal protein L11 | polymer | 134 | 14020.3 | 1 | UniProt (P0A7J7) Pfam (PF03946) Pfam (PF00298) | Escherichia coli (strain K12) | |
| 31 | EA (J2) | 50S ribosomal protein L13 | polymer | 142 | 16050.6 | 1 | UniProt (P0AA10) Pfam (PF00572) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL13 |
| 32 | FA (K2) | 50S ribosomal protein L14 | polymer | 123 | 13565.1 | 1 | UniProt (P0ADY3) Pfam (PF00238) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL14 |
| 33 | GA (L2) | 50S ribosomal protein L15 | polymer | 144 | 15008.5 | 1 | UniProt (P02413) Pfam (PF00828) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL15 |
| 34 | HA (M2) | 50S ribosomal protein L16 | polymer | 136 | 15327.3 | 1 | UniProt (P0ADY7) Pfam (PF00252) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL16 |
| 35 | IA (N2) | 50S ribosomal protein L17 | polymer | 125 | 14193.5 | 1 | UniProt (P0AG44) Pfam (PF01196) | Escherichia coli (strain K12) | |
| 36 | JA (O2) | 50S ribosomal protein L18 | polymer | 117 | 12794.7 | 1 | UniProt (P0C018) Pfam (PF00861) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL18 |
| 37 | KA (P2) | 50S ribosomal protein L19 | polymer | 114 | 13028.1 | 1 | UniProt (P0A7K6) Pfam (PF01245) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL19 |
| 38 | LA (Q2) | 50S ribosomal protein L20 | polymer | 117 | 13396.8 | 1 | UniProt (P0A7L3) Pfam (PF00453) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL20 |
| 39 | MA (R2) | 50S ribosomal protein L21 | polymer | 103 | 11586.4 | 1 | UniProt (P0AG48) Pfam (PF00829) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL21 |
| 40 | NA (S2) | 50S ribosomal protein L22 | polymer | 110 | 12253.4 | 1 | UniProt (P61175) Pfam (PF00237) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL22 |
| 41 | OA (T2) | 50S ribosomal protein L23 | polymer | 93 | 10546.5 | 1 | UniProt (P0ADZ0) Pfam (PF00276) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL23 |
| 42 | PA (U2) | 50S ribosomal protein L24 | polymer | 102 | 11078.9 | 1 | UniProt (P60624) Pfam (PF00467) Pfam (PF17136) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL24 |
| 43 | QA (V2) | 50S ribosomal protein L25 | polymer | 94 | 10713.5 | 1 | UniProt (P68919) Pfam (PF01386) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL25 |
| 44 | RA (W2) | 50S ribosomal protein L27 | polymer | 76 | 8275.5 | 1 | UniProt (P0A7L8) Pfam (PF01016) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL27 |
| 45 | SA (X2) | 50S ribosomal protein L28 | polymer | 77 | 8896.4 | 1 | UniProt (P0A7M2) Pfam (PF00830) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL28 |
| 46 | TA (Y2) | 50S ribosomal protein L29 | polymer | 62 | 7155.3 | 1 | UniProt (P0A7M6) Pfam (PF00831) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL29 |
| 47 | UA (Z2) | 50S ribosomal protein L30 | polymer | 58 | 6423.6 | 1 | UniProt (P0AG51) Pfam (PF00327) | Escherichia coli (strain K12) | Large ribosomal subunit protein uL30 |
| 48 | VA (a2) | 50S ribosomal protein L32 | polymer | 56 | 6332.2 | 1 | UniProt (P0A7N4) Pfam (PF01783) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL32 |
| 49 | WA (b2) | 50S ribosomal protein L33 | polymer | 51 | 5928.0 | 1 | UniProt (P0A7N9) Pfam (PF00471) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL33 |
| 50 | XA (c2) | 50S ribosomal protein L34 | polymer | 46 | 5397.5 | 1 | UniProt (P0A7P5) Pfam (PF00468) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL34 |
| 51 | YA (d2) | 50S ribosomal protein L35 | polymer | 64 | 7181.8 | 1 | UniProt (P0A7Q1) Pfam (PF01632) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL35,Ribosomal protein A |
| 52 | ZA (e2) | 50S ribosomal protein L36 | polymer | 38 | 4377.4 | 1 | UniProt (P0A7Q6) Pfam (PF00444) | Escherichia coli (strain K12) | Large ribosomal subunit protein bL36-A,Ribosomal protein B |
| 53 | AB (f2) | Deacylated tRNAi(Met) | polymer | 76 | 24541.7 | 1 | Escherichia coli K-12 | ||
| 54 | BB (g2) | fMet-Phe-tRNA(Phe) | polymer | 76 | 25167.5 | 1 | Saccharomyces cerevisiae (baker's yeast) | ||
| 55 | CB (A2) | Dirithromycin | non-polymer | 835.1 | 1 | Chemie (DI0) |
Sequence modifications
H2: 2 - 136 (UniProt: P0A7J3)
| PDB | External Database | Details |
|---|---|---|
| Val 85 | Ser 85 | conflict |
| Thr 86 | Met 86 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 54 |
| Total formula weight | 2164076.6 | |
| Non-Polymers* | Number of molecules | 1 |
| Total formula weight | 835.1 | |
| All* | Total formula weight | 2164911.7 |
