6XXG
Structure of truncated 1-deoxy-D-xylulose 5-phosphate synthase (DXS) from Deinococcus radiodurans
This is a non-PDB format compatible entry.
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B (AAA, BBB) | 1-deoxy-D-xylulose-5-phosphate synthase,1-deoxy-D-xylulose-5-phosphate synthase | polymer | 594 | 63398.9 | 2 | UniProt (Q9RUB5) Pfam (PF13292) Pfam (PF02779) Pfam (PF02780) | Deinococcus radiodurans (strain ATCC 13939 / DSM 20539 / JCM 16871 / LMG 4051 / NBRC 15346 / NCIMB 9279 / R1 / VKM B-1422) | 1-deoxyxylulose-5-phosphate synthase,DXPS,1-deoxyxylulose-5-phosphate synthase,DXPS |
| 2 | C, G, H, J, K (AAA, BBB) | MAGNESIUM ION | non-polymer | 24.3 | 5 | Chemie (MG) | |||
| 3 | D, F, I, M, N... (AAA, BBB) | CALCIUM ION | non-polymer | 40.1 | 6 | Chemie (CA) | |||
| 4 | E, L (AAA, BBB) | THIAMINE DIPHOSPHATE | non-polymer | 425.3 | 2 | Chemie (TPP) | |||
| 5 | P, Q (AAA, BBB) | water | water | 18.0 | 480 | Chemie (HOH) |
Sequence modifications
AAA, BBB: 2 - 199 (UniProt: Q9RUB5)
AAA, BBB: 244 - 629 (UniProt: Q9RUB5)
| PDB | External Database | Details |
|---|---|---|
| Ala -1 | - | expression tag |
| Met 0 | - | expression tag |
| Gly 1 | - | expression tag |
| PDB | External Database | Details |
|---|---|---|
| Gly 200 | - | linker |
| Gly 238 | - | linker |
| Gly 239 | - | linker |
| Gly 240 | - | linker |
| Gly 241 | - | linker |
| Gly 242 | - | linker |
| Gly 243 | - | linker |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 126797.8 | |
| Non-Polymers* | Number of molecules | 13 |
| Total formula weight | 1212.6 | |
| All* | Total formula weight | 128010.4 |
