6XS5
Crystal structure of human Vps29 complexed with RaPID-derived cyclic peptide RT-D1
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Vacuolar protein sorting-associated protein 29 | polymer | 192 | 21636.9 | 1 | UniProt (Q9UBQ0) Pfam (PF12850) In PDB | Homo sapiens (Human) | hVPS29,PEP11 homolog,Vesicle protein sorting 29 |
| 2 | B | 48V-DTY-ILE-ILE-ASP-THR-PRO-LEU-GLY-VAL-PHE-LEU-SER-SER-LEU-LYS-ARG | polymer | 17 | 1984.4 | 1 | synthetic construct | RT-D1 | |
| 3 | A | GLYCEROL | non-polymer | 92.1 | 2 | Chemie (GOL) | |||
| 4 | A | FORMIC ACID | non-polymer | 46.0 | 1 | Chemie (FMT) | |||
| 5 | water | water | 18.0 | 90 | Chemie (HOH) |
Sequence modifications
A: 1 - 182 (UniProt: Q9UBQ0)
| PDB | External Database | Details |
|---|---|---|
| Gly -9 | - | expression tag |
| Ser -8 | - | expression tag |
| Pro -7 | - | expression tag |
| Glu -6 | - | expression tag |
| Phe -5 | - | expression tag |
| Gly -4 | - | expression tag |
| Thr -3 | - | expression tag |
| Arg -2 | - | expression tag |
| Asp -1 | - | expression tag |
| Arg 0 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 2 |
| Total formula weight | 23621.2 | |
| Non-Polymers* | Number of molecules | 3 |
| Total formula weight | 230.2 | |
| All* | Total formula weight | 23851.4 |
