6XR8
Distinct conformational states of SARS-CoV-2 spike protein
This is a non-PDB format compatible entry.
Entity
Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
1 | A, B, C | Spike glycoprotein | polymer | 1310 | 144916.1 | 3 | UniProt (P0DTC2) Pfam (PF16451) Pfam (PF09408) Pfam (PF19209) Pfam (PF01601) In PDB | Severe acute respiratory syndrome coronavirus 2 (2019-nCoV) | S glycoprotein,E2,Peplomer protein |
2 | cA, I, kA, Q, sA... | alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 586.5 | 21 | In PDB GlyTouCan (G62182OO) | |||
3 | fA, L, oA, qA, U... | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 424.4 | 9 | In PDB GlyTouCan (G42666HT) | |||
4 | hA, N, 2 | 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 570.5 | 3 | In PDB GlyTouCan (G21290RB) | |||
5 | SA, 7A, n | alpha-D-mannopyranose-(1-3)-alpha-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose | branched | 748.7 | 3 | In PDB GlyTouCan (G48068RF) | |||
6 | B, C, A | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 21 | Chemie (NAG) |
Sequence modifications
A, B, C: 1 - 1273 (UniProt: P0DTC2)
PDB | External Database | Details |
---|---|---|
Leu 1274 | - | expression tag |
Glu 1275 | - | expression tag |
Ser 1276 | - | expression tag |
Gly 1277 | - | expression tag |
Gly 1278 | - | expression tag |
Gly 1279 | - | expression tag |
Ser 1280 | - | expression tag |
Ala 1281 | - | expression tag |
Trp 1282 | - | expression tag |
Ser 1283 | - | expression tag |
His 1284 | - | expression tag |
Pro 1285 | - | expression tag |
Gln 1286 | - | expression tag |
Phe 1287 | - | expression tag |
Glu 1288 | - | expression tag |
Lys 1289 | - | expression tag |
Gly 1290 | - | expression tag |
Gly 1291 | - | expression tag |
Gly 1292 | - | expression tag |
Ser 1293 | - | expression tag |
Gly 1294 | - | expression tag |
Gly 1295 | - | expression tag |
Gly 1296 | - | expression tag |
Ser 1297 | - | expression tag |
Gly 1298 | - | expression tag |
Gly 1299 | - | expression tag |
Ser 1300 | - | expression tag |
Ser 1301 | - | expression tag |
Ala 1302 | - | expression tag |
Trp 1303 | - | expression tag |
Ser 1304 | - | expression tag |
His 1305 | - | expression tag |
Pro 1306 | - | expression tag |
Gln 1307 | - | expression tag |
Phe 1308 | - | expression tag |
Glu 1309 | - | expression tag |
Lys 1310 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
Polymers | Number of chains | 3 |
Total formula weight | 434748.2 | |
Branched | Number of molecules | 36 |
Total formula weight | 20094.7 | |
Non-Polymers* | Number of molecules | 21 |
Total formula weight | 4645.4 | |
All* | Total formula weight | 459488.2 |