6XLP
Structure of the essential inner membrane lipopolysaccharide-PbgA complex
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | LPS binding protein | polymer | 596 | 68491.9 | 1 | UniProt (C3T3G2) Pfam (PF11893) Pfam (PF00884) UniProt (by SIFTS) (P0AD27) | Escherichia coli | DUF3413 domain-containing protein,Hydrolase of alkaline phosphatase superfamily,Hydrolase,inner membrane,Inner membrane protein YejM,Membrane protein,Putative hydrolase,Putative sulfatase,Sulfatase |
| 2 | B (B) | 2-deoxy-3-O-[(1R,3R)-1,3-dihydroxytetradecyl]-2-{[(3R)-3-hydroxytetradecanoyl]amino}-1-O-phosphono-alpha-D-glucopyranose-(6-1)-[3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid-(2-6)]1,5-anhydro-2-deoxy-2-{[(1S,3R)-1-hydroxy-3-(pentanoyloxy)undecyl]amino}-4-O-phosphono-D-glucitol | branched | 1445.6 | 1 | In PDB GlyTouCan (G54575HS) | |||
| 3 | C, D, E, F, G... (A) | SULFATE ION | non-polymer | 96.1 | 8 | Chemie (SO4) | |||
| 4 | K, L, M, N, O... (A) | (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate | non-polymer | 356.5 | 8 | Chemie (OLB) | |||
| 5 | S, T, U (A) | TETRAETHYLENE GLYCOL | non-polymer | 194.2 | 3 | Chemie (PG4) | |||
| 6 | V (A) | 1,2-Distearoyl-sn-glycerophosphoethanolamine | non-polymer | 748.1 | 1 | Chemie (3PE) | |||
| 7 | W (A) | water | water | 18.0 | 146 | Chemie (HOH) |
Sequence modifications
A: 1 - 586 (UniProt: C3T3G2)
| PDB | External Database | Details |
|---|---|---|
| Met -2 | - | initiating methionine |
| Gly -1 | - | expression tag |
| Ser 0 | - | expression tag |
| Gly 587 | - | expression tag |
| Glu 588 | - | expression tag |
| Asn 589 | - | expression tag |
| Leu 590 | - | expression tag |
| Tyr 591 | - | expression tag |
| Phe 592 | - | expression tag |
| Gln 593 | - | expression tag |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 1 |
| Total formula weight | 68491.9 | |
| Branched | Number of molecules | 1 |
| Total formula weight | 1445.6 | |
| Non-Polymers* | Number of molecules | 20 |
| Total formula weight | 4951.6 | |
| All* | Total formula weight | 74889.1 |
