6XLJ
Cryo-EM structure of EcmrR-RNAP-promoter initial transcribing complex with 4-nt RNA transcript (EcmrR-RPitc-4nt)
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A, B | DNA-directed RNA polymerase subunit alpha | polymer | 329 | 36558.7 | 2 | UniProt (P0A7Z6) Pfam (PF01193) Pfam (PF01000) Pfam (PF03118) UniProt (by SIFTS) (P0A7Z4) In PDB | Escherichia coli O157:H7 | RNAP subunit alpha,RNA polymerase subunit alpha,Transcriptase subunit alpha |
| 2 | C | DNA-directed RNA polymerase subunit beta | polymer | 1342 | 150820.9 | 1 | UniProt (B7MIX3) Pfam (PF04560) Pfam (PF04563) Pfam (PF04561) Pfam (PF04565) Pfam (PF10385) Pfam (PF00562) UniProt (by SIFTS) (P0A8V2) In PDB | Escherichia coli O157:H7 | RNAP subunit beta,RNA polymerase subunit beta,Transcriptase subunit beta |
| 3 | D | DNA-directed RNA polymerase subunit beta' | polymer | 1407 | 155366.8 | 1 | UniProt (P0A8T8) Pfam (PF04997) Pfam (PF00623) Pfam (PF04983) Pfam (PF05000) Pfam (PF04998) UniProt (by SIFTS) (P0A8T7) In PDB | Escherichia coli O157:H7 | RNAP subunit beta',RNA polymerase subunit beta',Transcriptase subunit beta' |
| 4 | E | DNA-directed RNA polymerase subunit omega | polymer | 91 | 10249.5 | 1 | UniProt (B7MFL0) Pfam (PF01192) UniProt (by SIFTS) (P0A800) In PDB | Escherichia coli O157:H7 | RNAP omega subunit,RNA polymerase omega subunit,Transcriptase subunit omega |
| 5 | F | RNA polymerase sigma factor RpoD | polymer | 613 | 70352.2 | 1 | UniProt (P00579) Pfam (PF03979) Pfam (PF00140) Pfam (PF04546) Pfam (PF04542) Pfam (PF04539) Pfam (PF04545) In PDB | Escherichia coli O157:H7 | Sigma-70 |
| 6 | G, H | MerR family transcriptional regulator EcmrR | polymer | 268 | 31394.2 | 2 | Escherichia coli O157:H7 | ||
| 7 | N | synthetic non-template strand DNA (54-MER) | polymer | 54 | 16718.7 | 1 | Escherichia coli O157:H7 | ||
| 8 | R | RNA (5'-D(*(GTP))-R(P*CP*AP*G)-3') | polymer | 4 | 1439.8 | 1 | Escherichia coli O157:H7 | ||
| 9 | T | synthetic template strand DNA (54-MER) | polymer | 54 | 16563.6 | 1 | Escherichia coli O157:H7 | ||
| 10 | A, C, D, G, H | CHAPSO | non-polymer | 631.9 | 5 | Chemie (1N7) | |||
| 11 | C, G, H | TETRAPHENYLANTIMONIUM ION | non-polymer | 430.2 | 3 | Chemie (118) | |||
| 12 | D, R | MAGNESIUM ION | non-polymer | 24.3 | 2 | Chemie (MG) | |||
| 13 | D | ZINC ION | non-polymer | 65.4 | 2 | Chemie (ZN) |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 11 |
| Total formula weight | 557417.3 | |
| Non-Polymers* | Number of molecules | 12 |
| Total formula weight | 4629.4 | |
| All* | Total formula weight | 562046.6 |
