6XI2
Apo form of POMGNT2
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A | Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 | polymer | 533 | 61017.5 | 1 | UniProt (Q8NAT1) Pfam (PF04577) In PDB | Homo sapiens (Human) | POMGnT2,Extracellular O-linked N-acetylglucosamine transferase-like,Glycosyltransferase-like domain-containing protein 2 |
| 2 | B | Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 | polymer | 528 | 60240.4 | 1 | UniProt (Q8NAT1) Pfam (PF04577) In PDB | Homo sapiens (Human) | POMGnT2,Extracellular O-linked N-acetylglucosamine transferase-like,Glycosyltransferase-like domain-containing protein 2 |
| 3 | D | Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 | polymer | 533 | 60972.3 | 1 | UniProt (Q8NAT1) Pfam (PF04577) In PDB | Homo sapiens (Human) | POMGnT2,Extracellular O-linked N-acetylglucosamine transferase-like,Glycosyltransferase-like domain-containing protein 2 |
| 4 | C | Protein O-linked-mannose beta-1,4-N-acetylglucosaminyltransferase 2 | polymer | 528 | 60143.3 | 1 | UniProt (Q8NAT1) Pfam (PF04577) In PDB | Homo sapiens (Human) | POMGnT2,Extracellular O-linked N-acetylglucosamine transferase-like,Glycosyltransferase-like domain-containing protein 2 |
| 5 | G | ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA-ALA | polymer | 10 | 728.8 | 1 | Homo sapiens (Human) | ||
| 6 | H | ALA-GLY-ALA-GLY-ALA-ALA-ALA-ALA-ALA-ALA | polymer | 10 | 700.7 | 1 | Homo sapiens (Human) | ||
| 7 | A, B, D | 2-acetamido-2-deoxy-beta-D-glucopyranose | non-polymer | 221.2 | 3 | Chemie (NAG) | |||
| 8 | D, C, A, B | PHOSPHATE ION | non-polymer | 95.0 | 25 | Chemie (PO4) | |||
| 9 | water | water | 18.0 | 148 | Chemie (HOH) |
Sequence modifications
A: 48 - 580 (UniProt: Q8NAT1)
B: 52 - 580 (UniProt: Q8NAT1)
D: 48 - 580 (UniProt: Q8NAT1)
C: 52 - 580 (UniProt: Q8NAT1)
| PDB | External Database | Details |
|---|---|---|
| Ala 55 | Lys 55 | conflict |
| Ala 126 | Asn 126 | conflict |
| Ala 279 | His 279 | conflict |
| Ala 427 | Gln 427 | conflict |
| Ala 477 | Thr 477 | conflict |
| Ala 478 | Val 478 | conflict |
| Ala 518 | Arg 518 | conflict |
| Ala 529 | Gln 529 | conflict |
| Ala 532 | Asn 532 | conflict |
| Ala 533 | Thr 533 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 55 | Lys 55 | conflict |
| Ala 126 | Asn 126 | conflict |
| Ala 277 | Val 277 | conflict |
| Ala 285 | Gly 285 | conflict |
| Gln 421 | Glu 421 | conflict |
| Ala 424 | Arg 424 | conflict |
| Ala 466 | Lys 466 | conflict |
| Ala 467 | Gly 467 | conflict |
| - | Arg 468 | deletion |
| Ala 472 | Arg 472 | conflict |
| Ala 476 | Trp 476 | conflict |
| Ala 477 | Thr 477 | conflict |
| Ala 478 | Val 478 | conflict |
| Ala 518 | Arg 518 | conflict |
| Ala 532 | Asn 532 | conflict |
| Ala 533 | Thr 533 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 55 | Lys 55 | conflict |
| Ala 277 | Val 277 | conflict |
| Ala 285 | Gly 285 | conflict |
| Ala 286 | Glu 286 | conflict |
| Ala 293 | Ser 293 | conflict |
| Ala 308 | Leu 308 | conflict |
| Ser 427 | Gln 427 | conflict |
| Ala 466 | Lys 466 | conflict |
| Ala 468 | Arg 468 | conflict |
| Ala 478 | Val 478 | conflict |
| Ala 518 | Arg 518 | conflict |
| Ala 529 | Gln 529 | conflict |
| PDB | External Database | Details |
|---|---|---|
| Ala 55 | Lys 55 | conflict |
| Ala 277 | Val 277 | conflict |
| Ala 285 | Gly 285 | conflict |
| Ala 286 | Glu 286 | conflict |
| Ala 419 | Arg 419 | conflict |
| Ala 424 | Arg 424 | conflict |
| - | Arg 468 | deletion |
| Ala 468 | Pro 469 | conflict |
| Ala 469 | Gly 470 | conflict |
| Ala 475 | Lys 475 | conflict |
| Ala 476 | Trp 476 | conflict |
| Ala 477 | Thr 477 | conflict |
| Ala 478 | Val 478 | conflict |
| Ala 518 | Arg 518 | conflict |
| Ala 529 | Gln 529 | conflict |
| Ala 532 | Asn 532 | conflict |
| Ala 533 | Thr 533 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 6 |
| Total formula weight | 243803.1 | |
| Non-Polymers* | Number of molecules | 28 |
| Total formula weight | 3037.9 | |
| All* | Total formula weight | 246841.0 |
