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6X96

Cryo-EM model of HIV-1 Env BG505 SOSIP.664 in complex with rabbit monoclonal antibody 10A fragment antigen binding variable domain

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A, E, I
(A, C, G)
BG505 HIV-1 Env gp120polymer51657946.03UniProt (Q2N0S6)
Pfam (PF00516)
Human immunodeficiency virus 1 (HIV-1)
2B, F, J
(B, D, I)
BG505 HIV-1 Env gp41polymer15317146.53UniProt (Q2N0S6)
Pfam (PF00517)
Human immunodeficiency virus 1 (HIV-1)
3C, G, K
(H, E, J)
monoclonal antibody 10A fragment antigen binding heavy chainpolymer23624678.03Oryctolagus cuniculus (rabbit)
4D, H, L
(L, F, K)
monoclonal antibody 10A kappa chainpolymer24225781.83Oryctolagus cuniculus (rabbit)
5M, Q, U
(M, Q, U)
alpha-D-mannopyranose-(1-3)-beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched748.73In PDB
GlyTouCan (G81315DD)
6N, O, P, R, S...
(N, O, P, R, S...)
2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranosebranched424.49In PDB
GlyTouCan (G42666HT)
7AA, AB, BA, BB, CA...
(A, G, C)
2-acetamido-2-deoxy-beta-D-glucopyranosenon-polymer221.233Chemie (NAG)
Sequence modifications
A, C, G: 31 - 513 (UniProt: Q2N0S6)
PDBExternal DatabaseDetails
Met -4-expression tag
Asp -3-expression tag
Ala -2-expression tag
Met -1-expression tag
Lys 0-expression tag
Arg 1-expression tag
Gly 2-expression tag
Leu 3-expression tag
Cys 4-expression tag
Cys 5-expression tag
Val 6-expression tag
Leu 7-expression tag
Leu 8-expression tag
Leu 9-expression tag
Cys 10-expression tag
Gly 11-expression tag
Ala 12-expression tag
Val 13-expression tag
Phe 14-expression tag
Val 15-expression tag
Ser 16-expression tag
Pro 17-expression tag
Ser 18-expression tag
Gln 19-expression tag
Glu 20-expression tag
Ile 21-expression tag
His 22-expression tag
Ala 23-expression tag
Arg 24-expression tag
Phe 25-expression tag
Arg 26-expression tag
Arg 27-expression tag
Gly 28-expression tag
Ala 29-expression tag
Arg 30-expression tag
Asn 332Thr 330engineered mutation
Cys 501Ala 498engineered mutation
Arg 509Glu 506engineered mutation
Arg 510Lys 507engineered mutation
Arg 512Ala 509engineered mutation
Arg 513Val 510engineered mutation
B, D, I: 512 - 664 (UniProt: Q2N0S6)
PDBExternal DatabaseDetails
Pro 559Ile 556engineered mutation
Cys 605Thr 602engineered mutation
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains12
Total formula weight376656.7
BranchedNumber of molecules12
Total formula weight6065.7
Non-Polymers*Number of molecules33
Total formula weight7299.9
All*Total formula weight390022.2
*Water molecules are not included.

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PDB entries from 2025-07-23

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