6WPI
Crystal structure of Nop9 in complex with ITS1 RNA
Entity
| Entity ID | Chain ID | Description | Type | Chain length | Formula weight | Number of molecules | DB Name (Accession) | Biological source | Descriptive keywords |
| 1 | A (A) | Nucleolar protein 9 | polymer | 591 | 68799.3 | 1 | UniProt (P47077) Pfam (PF22493) | Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (Baker's yeast) | Pumilio domain-containing protein NOP9 |
| 2 | B, C (B, C) | RNA (47-MER) | polymer | 47 | 15122.0 | 2 | Saccharomyces cerevisiae S288C | ||
| 3 | D (A) | 3,3',3''-phosphanetriyltripropanoic acid | non-polymer | 250.2 | 1 | Chemie (TCE) | |||
| 4 | E (A) | GLYCEROL | non-polymer | 92.1 | 1 | Chemie (GOL) |
Sequence modifications
A: 46 - 645 (UniProt: P47077)
| PDB | External Database | Details |
|---|---|---|
| Ser 164 | Pro 164 | linker |
| Gly 174 | Ser 165 | linker |
| - | Phe 166 | deletion |
| - | Asp 167 | deletion |
| - | Asn 168 | deletion |
| - | Asn 169 | deletion |
| - | Glu 170 | deletion |
| - | Lys 171 | deletion |
| - | Glu 172 | deletion |
| - | Gly 173 | deletion |
| - | Pro 174 | deletion |
| Ser 175 | Tyr 175 | linker |
| Thr 430 | Ala 430 | conflict |
Sequence viewer
Contents of the asymmetric unit
| Polymers | Number of chains | 3 |
| Total formula weight | 99043.3 | |
| Non-Polymers* | Number of molecules | 2 |
| Total formula weight | 342.3 | |
| All* | Total formula weight | 99385.6 |
