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6WHM

The crystal structure of the 2009/H1N1/California PA endonuclease wild type bound to DNA oligomer TAGC (cleaved TTAGCATT, 5mM overnight DNA soak)

Entity
Entity IDChain IDDescriptionTypeChain lengthFormula weightNumber of moleculesDB Name (Accession)Biological sourceDescriptive keywords
1A
(A)
PA-X protein,Polymerase acidic proteinpolymer19723148.31UniProt (A0A481PFF5)
UniProt (C6H0Y9)
Pfam (PF00603)
Influenza A virus
2B
(B)
DNA (5'-D(P*TP*AP*GP*C)-3')polymer82416.61synthetic construct
3C, D
(A)
GLYCEROLnon-polymer92.12Chemie (GOL)
4E, I
(A)
MAGNESIUM IONnon-polymer24.32Chemie (MG)
5F
(A)
MANGANESE (II) IONnon-polymer54.91Chemie (MN)
6G, H
(A)
SULFATE IONnon-polymer96.12Chemie (SO4)
7J, K
(A, B)
waterwater18.0136Chemie (HOH)
Sequence modifications
A: 1 - 50 (UniProt: A0A481PFF5)
PDBExternal DatabaseDetails
Met -19-expression tag
Gly -18-expression tag
Ser -17-expression tag
Ser -16-expression tag
His -15-expression tag
His -14-expression tag
His -13-expression tag
His -12-expression tag
His -11-expression tag
His -10-expression tag
Ser -9-expression tag
Ser -8-expression tag
Gly -7-expression tag
Leu -6-expression tag
Val -5-expression tag
Pro -4-expression tag
Arg -3-expression tag
Gly -2-expression tag
Ser -1-expression tag
His 0-expression tag
Gly 51-linker
Gly 52-linker
Ser 53-linker
Lys 73-linker
A: 74 - 196 (UniProt: C6H0Y9)
Sequence viewer
Contents of the asymmetric unit
PolymersNumber of chains2
Total formula weight25565.0
Non-Polymers*Number of molecules7
Total formula weight479.9
All*Total formula weight26044.8
*Water molecules are not included.

246031

PDB entries from 2025-12-10

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